IL_4V85_094

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

4V85|1|BA|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_094 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.1439

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V85|1|BA|A|844
4V85|1|BA|A|845
4V85|1|BA|U|846
4V85|1|BA|U|847
*
4V85|1|BA|A|933
4V85|1|BA|U|934

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L30