IL_4V85_146

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V85|1|BA|A|1938, 4V85|1|BA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_146 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.1264

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V85|1|BA|C|1934
4V85|1|BA|G|1935
4V85|1|BA|A|1936
4V85|1|BA|A|1937
4V85|1|BA|A|1938
4V85|1|BA|U|1939
4V85|1|BA|U|1940
4V85|1|BA|C|1941
4V85|1|BA|C|1942
4V85|1|BA|U|1943
4V85|1|BA|U|1944
4V85|1|BA|G|1945
*
4V85|1|BA|C|1961
4V85|1|BA|C|1962
4V85|1|BA|U|1963
4V85|1|BA|G|1964

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

16S rRNA

Chain BC

50S ribosomal protein L2