IL_4V85_198

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_198 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0869

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V85|1|BA|U|1851
4V85|1|BA|U|1852
4V85|1|BA|A|1853
4V85|1|BA|A|1854
4V85|1|BA|U|1855
4V85|1|BA|U|1856
4V85|1|BA|G|1857
4V85|1|BA|A|1858
4V85|1|BA|U|1859
4V85|1|BA|G|1860
*
4V85|1|BA|U|1882
4V85|1|BA|U|1883
4V85|1|BA|G|1884
4V85|1|BA|A|1885
4V85|1|BA|U|1886
4V85|1|BA|C|1887
4V85|1|BA|G|1888
4V85|1|BA|A|1889
4V85|1|BA|A|1890
4V85|1|BA|G|1891

Current chains

Chain BA

23S rRNA

Nearby chains