IL_4V87_208

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V87|1|CA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_208 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0608

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V87|1|CA|C|569
4V87|1|CA|G|570
4V87|1|CA|U|571
4V87|1|CA|A|572
4V87|1|CA|A|573
4V87|1|CA|A|574
4V87|1|CA|G|575
*
4V87|1|CA|C|880
4V87|1|CA|G|881

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S RIBOSOMAL PROTEIN S12

Chain CT

30S RIBOSOMAL PROTEIN S17