IL_4V87_238

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V87|1|CA|C|1400, 4V87|1|CA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_238 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2168

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V87|1|CA|C|1399
4V87|1|CA|C|1400
4V87|1|CA|G|1401
*
4V87|1|CA|C|1501
4V87|1|CA|A|1502
4V87|1|CA|A|1503
4V87|1|CA|G|1504

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain C1

MRNA

Chain CC

Transfer RNA; tRNA