IL_4V87_247

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAGG*CCUCGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCGAGG,CCUCGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_247 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.398

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V87|1|CB|C|2
4V87|1|CB|C|3
4V87|1|CB|G|4
4V87|1|CB|A|5
4V87|1|CB|G|6
4V87|1|CB|G|7
*
4V87|1|CB|C|77
4V87|1|CB|C|78
4V87|1|CB|U|79
4V87|1|CB|C|80
4V87|1|CB|G|81
4V87|1|CB|G|82

Current chains

Chain CB

TRNA-LEU

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA