IL_4V87_335

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_335 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3287

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V87|1|DA|C|2107
4V87|1|DA|C|2108
4V87|1|DA|U|2109
4V87|1|DA|G|2110
*
4V87|1|DA|C|2179
4V87|1|DA|U|2180
4V87|1|DA|G|2181
4V87|1|DA|G|2182

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain CD

Transfer RNA; tRNA