IL_4V88_001

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_001 not in the Motif Atlas

Homologous match to IL_8C3A_001

Geometric discrepancy: 0.1739

The information below is about IL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A1|G|5
4V88|1|A1|A|6
4V88|1|A1|C|7
*
4V88|1|A4|G|152
4V88|1|A4|U|153
4V88|1|A4|C|154

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain BG

60S ribosomal protein L8-A

Chain BX

60S ribosomal protein L25