IL_8C3A_001

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_001 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.195

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8C3A|1|1|G|4
8C3A|1|1|A|5
8C3A|1|1|C|6
*
8C3A|1|4|G|152
8C3A|1|4|U|153
8C3A|1|4|C|154

Current chains

Chain 1

25S

Chain 4

5.8S

Nearby chains

Chain 8

60S ribosomal protein L25

Chain p

60S ribosomal protein L8

Chain v

60S ribosomal protein L15-A