IL_4V88_023

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_023 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.0536

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V88|1|A1|G|725
4V88|1|A1|G|726
4V88|1|A1|G|727
4V88|1|A1|G|728
*
4V88|1|A1|U|741
4V88|1|A1|G|742
4V88|1|A1|C|743
4V88|1|A1|A|744
4V88|1|A1|C|745

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BQ

60S ribosomal protein L18-A

Chain Bb

60S ribosomal protein L29