IL_4V88_052

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

4V88|1|A1|C|1196, 4V88|1|A1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_052 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.0308

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V88|1|A1|G|1194
4V88|1|A1|A|1195
4V88|1|A1|C|1196
4V88|1|A1|A|1197
4V88|1|A1|C|1198
4V88|1|A1|C|1199
4V88|1|A1|A|1200
4V88|1|A1|C|1201
4V88|1|A1|A|1202
4V88|1|A1|A|1203
4V88|1|A1|A|1204
4V88|1|A1|A|1205
*
4V88|1|A1|U|1299
4V88|1|A1|G|1300
4V88|1|A1|A|1301
4V88|1|A1|A|1302
4V88|1|A1|A|1303
4V88|1|A1|A|1304
4V88|1|A1|U|1305
4V88|1|A1|G|1306
4V88|1|A1|G|1307
4V88|1|A1|A|1308
4V88|1|A1|U|1309
4V88|1|A1|G|1310
4V88|1|A1|G|1311
4V88|1|A1|C|1312
4V88|1|A1|G|1313
4V88|1|A1|C|1314

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain BB

60S ribosomal protein L3

Chain BF

60S ribosomal protein L7-A

Chain BI

60S ribosomal protein L10

Chain BO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain Bf

60S ribosomal protein L33-A

Chain Bm

60S ribosomal protein L40