3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUAUCA*UCUUAUG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V88_073 not in the Motif Atlas
Homologous match to IL_5TBW_072
Geometric discrepancy: 0.0531
The information below is about IL_5TBW_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_39753.2
Basepair signature
cWW-L-R-tWH-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4V88|1|A1|U|1702
4V88|1|A1|U|1703
4V88|1|A1|A|1704
4V88|1|A1|U|1705
4V88|1|A1|C|1706
4V88|1|A1|A|1707
*
4V88|1|A1|U|1737
4V88|1|A1|C|1738
4V88|1|A1|U|1739
4V88|1|A1|U|1740
4V88|1|A1|A|1741
4V88|1|A1|U|1742
4V88|1|A1|G|1743

Current chains

Chain A1
25S rRNA

Nearby chains

Chain Bg
60S ribosomal protein L34-A

Coloring options:


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