IL_4V88_089

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

4V88|1|A1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_089 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.1308

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|G|2206
4V88|1|A1|A|2207
4V88|1|A1|A|2208
4V88|1|A1|U|2209
4V88|1|A1|G|2210
*
4V88|1|A1|C|2235
4V88|1|A1|G|2236
4V88|1|A1|C|2237

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA