IL_4V88_092
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 4V88|1|A1|A|2281, 4V88|1|A1|C|2287, 4V88|1|A1|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_092 not in the Motif Atlas
- Homologous match to IL_5TBW_090
- Geometric discrepancy: 0.063
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A1|C|2277
4V88|1|A1|C|2278
4V88|1|A1|A|2279
4V88|1|A1|A|2280
4V88|1|A1|A|2281
4V88|1|A1|U|2282
4V88|1|A1|G|2283
4V88|1|A1|C|2284
4V88|1|A1|C|2285
4V88|1|A1|U|2286
4V88|1|A1|C|2287
4V88|1|A1|G|2288
*
4V88|1|A1|C|2304
4V88|1|A1|G|2305
4V88|1|A1|C|2306
4V88|1|A1|G|2307
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Bn
- 60S ribosomal protein L41-A
Coloring options: