IL_4V88_106

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4V88|1|A1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_106 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0501

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V88|1|A1|G|2828
4V88|1|A1|U|2829
4V88|1|A1|G|2830
*
4V88|1|A1|U|2858
4V88|1|A1|U|2859
4V88|1|A1|U|2860
4V88|1|A1|U|2861
4V88|1|A1|U|2862

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BI

60S ribosomal protein L10