IL_4V88_109

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V88|1|A1|G|2945, 4V88|1|A1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_109 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0461

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V88|1|A1|C|2879
4V88|1|A1|U|2880
4V88|1|A1|C|2881
*
4V88|1|A1|G|2943
4V88|1|A1|U|2944
4V88|1|A1|G|2945
4V88|1|A1|A|2946
4V88|1|A1|G|2947

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BV

60S ribosomal protein L23-A