IL_4V88_119

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

4V88|1|A1|U|3056, 4V88|1|A1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_119 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0535

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V88|1|A1|U|3054
4V88|1|A1|U|3055
4V88|1|A1|U|3056
4V88|1|A1|U|3057
4V88|1|A1|U|3058
4V88|1|A1|G|3059
*
4V88|1|A1|C|3084
4V88|1|A1|G|3085
4V88|1|A1|A|3086
4V88|1|A1|A|3087
4V88|1|A1|G|3088

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BW

60S ribosomal protein L24-A

Chain Bd

60S ribosomal protein L31-A