IL_4V88_125
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 4V88|1|A1|A|3180, 4V88|1|A1|A|3186, 4V88|1|A1|U|3207, 4V88|1|A1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_125 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0521
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A1|U|3179
4V88|1|A1|A|3180
4V88|1|A1|C|3181
4V88|1|A1|G|3182
4V88|1|A1|A|3183
4V88|1|A1|A|3184
4V88|1|A1|U|3185
4V88|1|A1|A|3186
4V88|1|A1|A|3187
4V88|1|A1|G|3188
*
4V88|1|A1|C|3204
4V88|1|A1|G|3205
4V88|1|A1|C|3206
4V88|1|A1|U|3207
4V88|1|A1|G|3208
4V88|1|A1|A|3209
4V88|1|A1|A|3210
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein L6-A
- Chain BH
- 60S ribosomal protein L9-A
- Chain BM
- 60S ribosomal protein L14-A
- Chain BO
- 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
- Chain BS
- 60S ribosomal protein L20-A
- Chain Bf
- 60S ribosomal protein L33-A
Coloring options: