IL_4V88_129

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_129 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.0838

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V88|1|A1|C|3235
4V88|1|A1|U|3236
4V88|1|A1|U|3237
4V88|1|A1|G|3238
*
4V88|1|A1|C|3249
4V88|1|A1|U|3250
4V88|1|A1|U|3251
4V88|1|A1|G|3252

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B