IL_4V88_134
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_134 not in the Motif Atlas
- Homologous match to IL_5TBW_133
- Geometric discrepancy: 0.0469
- The information below is about IL_5TBW_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
4V88|1|A1|U|3332
4V88|1|A1|G|3333
4V88|1|A1|U|3334
4V88|1|A1|A|3335
4V88|1|A1|A|3336
4V88|1|A1|G|3337
*
4V88|1|A1|C|3367
4V88|1|A1|U|3368
4V88|1|A1|G|3369
4V88|1|A1|A|3370
4V88|1|A1|G|3371
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein L3
- Chain BW
- 60S ribosomal protein L24-A
Coloring options: