Motif IL_83162.8 Version IL_83162.8 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_099 | 4V9F | 0.1177 | 1 | tHS double platform | 0 | LSU rRNA | U | 2864 | G | 2865 | U | 2866 | G | 2867 | C | 2868 | G | 2869 | * | U | 2888 | U | 2889 | A | 2891 | G | 2892 | cWW | tSH | tHH | cWW |
| 2 | IL_7A0S_101 | 7A0S | 0.1031 | 1 | X | LSU rRNA | U | 2822 | G | 2823 | C | 2824 | A | 2825 | C | 2826 | G | 2827 | * | U | 2840 | U | 2841 | A | 2843 | G | 2844 | cWW | ntSH | tHH | cWW | |
| 3 | IL_8C3A_139 | 8C3A | 0.0000 | 1 | 1 | LSU rRNA | U | 3297 | G | 3298 | U | 3299 | A | 3300 | A | 3301 | G | 3302 | * | C | 3332 | U | 3333 | A | 3335 | G | 3336 | cWW | tSH | tHH | cWW | |
| 4 | IL_5TBW_133 | 5TBW | 0.0813 | 1 | 1 | LSU rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | A | 3370 | G | 3371 | cWW | ntSH | ntHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*CUGAG | 2 |
| UGUGCG*UUAAG | 1 |
| UGCACG*UUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 2 |
| GUGC*UAA | 1 |
| GCAC*UCA | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tHS double platform (1)
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Heat map statistics
- Min 0.08 | Avg 0.08 | Max 0.12
Coloring options: