IL_4V88_137

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_137 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1763

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V88|1|A1|G|3345
4V88|1|A1|U|3346
4V88|1|A1|A|3347
*
4V88|1|A1|U|3358
4V88|1|A1|A|3359
4V88|1|A1|C|3360

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8-A

Chain BU

60S ribosomal protein L22-A