IL_4V88_138

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_138 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1914

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V88|1|A1|A|3347
4V88|1|A1|G|3348
4V88|1|A1|C|3349
*
4V88|1|A1|G|3356
4V88|1|A1|U|3357
4V88|1|A1|U|3358

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8-A

Chain BU

60S ribosomal protein L22-A