IL_4V88_139

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

4V88|1|A1|U|3354, 4V88|1|A1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_139 not in the Motif Atlas

Homologous match to IL_5TBW_136

Geometric discrepancy: 0.1223

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V88|1|A1|C|3349
4V88|1|A1|C|3350
*
4V88|1|A1|G|3353
4V88|1|A1|U|3354
4V88|1|A1|U|3355
4V88|1|A1|G|3356

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8-A

Chain BU

60S ribosomal protein L22-A