IL_4V88_150

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V88|1|A2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_150 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.0911

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V88|1|A2|G|143
4V88|1|A2|U|144
4V88|1|A2|A|145
4V88|1|A2|U|146
4V88|1|A2|A|147
4V88|1|A2|A|148
4V88|1|A2|C|149
*
4V88|1|A2|G|165
4V88|1|A2|C|166
4V88|1|A2|U|167
4V88|1|A2|A|168
4V88|1|A2|A|169
4V88|1|A2|U|170
4V88|1|A2|A|171
4V88|1|A2|C|172

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AY

40S ribosomal protein S24-A

Chain BW

60S ribosomal protein L24-A