IL_4V88_177

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_177 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.1969

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V88|1|A2|C|700
4V88|1|A2|U|701
4V88|1|A2|G|702
*
4V88|1|A2|C|736
4V88|1|A2|A|737
4V88|1|A2|G|738

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A