IL_4V88_223
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 4V88|1|A2|U|1657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_223 not in the Motif Atlas
- Homologous match to IL_4V88_469
- Geometric discrepancy: 0.5734
- The information below is about IL_4V88_469
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4V88|1|A2|U|1656
4V88|1|A2|U|1657
4V88|1|A2|G|1658
*
4V88|1|A2|U|1743
4V88|1|A2|A|1744
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 40S ribosomal protein S23-A
- Chain BV
- 60S ribosomal protein L23-A
- Chain Bn
- 60S ribosomal protein L41-A
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