IL_4V88_228

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_228 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1115

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V88|1|A2|A|1678
4V88|1|A2|G|1679
4V88|1|A2|G|1680
4V88|1|A2|A|1681
4V88|1|A2|U|1682
*
4V88|1|A2|A|1719
4V88|1|A2|G|1720
4V88|1|A2|A|1721
4V88|1|A2|A|1722
4V88|1|A2|U|1723

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8-A

Chain BW

60S ribosomal protein L24-A