IL_4V88_229

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_229 not in the Motif Atlas

Homologous match to IL_4V88_475

Geometric discrepancy: 0.4295

The information below is about IL_4V88_475

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V88|1|A2|C|1683
4V88|1|A2|U|1684
4V88|1|A2|G|1685
*
4V88|1|A2|C|1716
4V88|1|A2|G|1717
4V88|1|A2|G|1718

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8-A