IL_4V88_236
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 4V88|1|A3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_236 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0506
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V88|1|A3|A|72
4V88|1|A3|C|73
4V88|1|A3|C|74
4V88|1|A3|G|75
4V88|1|A3|A|76
4V88|1|A3|G|77
4V88|1|A3|U|78
4V88|1|A3|A|79
4V88|1|A3|G|80
*
4V88|1|A3|C|100
4V88|1|A3|G|101
4V88|1|A3|A|102
4V88|1|A3|A|103
4V88|1|A3|A|104
4V88|1|A3|C|105
4V88|1|A3|U|106
Current chains
- Chain A3
- 5S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 60S ribosomal protein L7-A
- Chain BI
- 60S ribosomal protein L10
- Chain BS
- 60S ribosomal protein L20-A
- Chain BT
- 60S ribosomal protein L21-A
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