IL_4V88_237

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

4V88|1|A3|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_237 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.06

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V88|1|A3|A|84
4V88|1|A3|G|85
4V88|1|A3|U|86
4V88|1|A3|G|87
*
4V88|1|A3|C|94
4V88|1|A3|A|95
4V88|1|A3|U|96

Current chains

Chain A3

5S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BF

60S ribosomal protein L7-A

Chain BI

60S ribosomal protein L10

Chain BS

60S ribosomal protein L20-A