IL_4V88_238
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_238 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0299
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A4|A|44
4V88|1|A4|C|45
4V88|1|A4|G|46
4V88|1|A4|C|47
4V88|1|A4|A|48
4V88|1|A4|G|49
4V88|1|A4|C|50
4V88|1|A4|G|51
4V88|1|A4|A|52
4V88|1|A4|A|53
4V88|1|A4|A|54
4V88|1|A4|U|55
4V88|1|A4|G|56
4V88|1|A4|C|57
4V88|1|A4|G|58
4V88|1|A4|A|59
4V88|1|A4|U|60
4V88|1|A4|A|61
4V88|1|A4|C|62
4V88|1|A4|G|63
4V88|1|A4|U|64
*
4V88|1|A4|A|96
4V88|1|A4|A|97
4V88|1|A4|U|98
4V88|1|A4|C|99
4V88|1|A4|U|100
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- 60S ribosomal protein L25
- Chain Bh
- 60S ribosomal protein L35-A
- Chain Bj
- 60S ribosomal protein L37-A
- Chain Bl
- 60S ribosomal protein L39
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