IL_4V88_251

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUU,AAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_251 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1144

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V88|1|A5|C|166
4V88|1|A5|U|167
4V88|1|A5|U|168
*
4V88|1|A5|A|254
4V88|1|A5|A|255
4V88|1|A5|G|256

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DL

60S ribosomal protein L13-A

Chain Dh

60S ribosomal protein L35-A