IL_4V88_289

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGUC,GACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_289 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2379

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V88|1|A5|G|1020
4V88|1|A5|G|1021
4V88|1|A5|U|1022
4V88|1|A5|C|1023
*
4V88|1|A5|G|1029
4V88|1|A5|A|1030
4V88|1|A5|C|1031
4V88|1|A5|C|1032

Current chains

Chain A5

25S rRNA

Nearby chains

Chain Ch

Suppressor protein STM1