IL_4V88_305
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 4V88|1|A5|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02471.1
- Basepair signature
- cWW-tSS-L-tSH-tSS-tHS-tHS-cWW
- Number of instances in this motif group
- 41
Unit IDs
4V88|1|A5|U|1388
4V88|1|A5|G|1389
4V88|1|A5|A|1390
4V88|1|A5|C|1391
4V88|1|A5|G|1392
4V88|1|A5|A|1393
4V88|1|A5|A|1394
4V88|1|A5|G|1395
*
4V88|1|A5|U|1415
4V88|1|A5|C|1416
4V88|1|A5|G|1417
4V88|1|A5|A|1418
4V88|1|A5|A|1419
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DC
- 60S ribosomal protein L4-A
- Chain DE
- 60S ribosomal protein L6-A
- Chain DP
- 60S ribosomal protein L17-A
- Chain DY
- 60S ribosomal protein L26-A
- Chain De
- 60S ribosomal protein L32
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