IL_02471.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12	1-5	1-12	2-3	2-11	3-11	4-9	4-11	5-9	5-10	5-12	6-9	6-10	7-8	8-10
1	IL_3J9W_155	3J9W	0.4053	1	Kink-turn (H)	BA	LSU rRNA	C	2158	U	2159	U	2160	G	2162	A	2163	A	2164	A	2165	*	U	2184	G	2185	G	2186	A	2187	G	2188		cWW		ntsS			tSH		tHS		tHS		cWW
2	IL_3J9W_111	3J9W	0.3392	1	Kink-turn (H)	BA	LSU rRNA	C	1248	U	1249	G	1250	G	1252	A	1253	A	1254	G	1255	*	U	1274	G	1275	G	1276	A	1277	G	1278		cWW		ntsS			tSH		tHS		tHS		cWW
3	IL_4IOA_045	4IOA	0.3175	1	Kink-turn	X	LSU rRNA	C	1221	G	1222	G	1223	G	1225	A	1226	A	1227	G	1228	*	U	1247	G	1248	G	1249	A	1250	G	1251		cWW					tSH		tHS		tHS		cWW
4	IL_4V9F_048	4V9F	0.3056	1	Kink-turn	0	LSU rRNA	G	1312	A	1313	U	1314	G	1316	A	1317	A	1318	G	1319	*	U	1338	G	1339	G	1340	A	1341	C	1342		cWW		ntsS			tSH		tHS		tHS		cWW
5	IL_4V8P_364	4V8P	0.3345	1	Kink-turn (H)	F1	LSU rRNA	C	1414	C	1415	U	1416	G	1418	A	1419	A	1420	G	1421	*	U	1441	G	1442	G	1443	A	1444	G	1445		cWW		ntsS			tSH		ntHS		tHS		cWW
6	IL_3J79_057	3J79	0.3072	1	Kink-turn (H)	A	LSU rRNA	U	1536	G	1537	U	1538	G	1540	A	1541	A	1542	G	1543	*	U	1563	G	1564	G	1565	A	1566	A	1567		cWW		ntsS					tHS		tHS		cWW
7	IL_3J7P_078	3J7P	0.2587	1	Kink-turn (H)	5	LSU rRNA	C	2302	C	2303	U	2304	G	2306	A	2307	A	2308	G	2309	*	U	2329	G	2330	G	2331	A	2332	G	2333		cWW			ntWH							ntHS	cWW
8	IL_5AJ0_095	5AJ0	0.2065	1	Kink-turn (H)	A2	LSU rRNA	C	2281	C	2282	U	2283	G	2285	A	2286	A	2287	G	2288	*	U	2308	G	2309	G	2310	A	2311	G	2312		cWW		ntsS			tSH		tHS		tHS		cWW
9	IL_5J7L_288	5J7L	0.1891	1	Kink-turn	DA	LSU rRNA	C	1208	U	1209	G	1210	G	1212	A	1213	A	1214	G	1215	*	U	1234	G	1235	G	1236	A	1237	G	1238		cWW		tsS			tSH		tHS		tHS		cWW
10	IL_5FDU_048	5FDU	0.1573	1	Kink-turn (H)	1A	LSU rRNA	C	1253	G	1254	A	1255	G	1257	A	1258	A	1259	G	1260	*	U	1280	G	1281	G	1282	A	1283	G	1284		cWW		ntsS			tSH		tHS		tHS		cWW
11	IL_4V91_065	4V91	0.2240	1	Kink-turn (H)	1	LSU rRNA	U	1388	G	1389	A	1390	G	1392	A	1393	A	1394	G	1395	*	U	1415	C	1416	G	1417	A	1418	A	1419		cWW		tsS			tSH		tHS		tHS		cWW
12	IL_4V88_305	4V88	0.2195	1	Kink-turn (H)	A5	LSU rRNA	U	1388	G	1389	A	1390	G	1392	A	1393	A	1394	G	1395	*	U	1415	C	1416	G	1417	A	1418	A	1419		cWW		tsS			tSH		tHS		tHS		cWW
13	IL_3V7E_002	3V7E	0.1231	1	Kink-turn	C	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	A	38	*	U	17	G	18	G	19	A	20	G	21		cWW		tsS			tSH				tHS		cWW
14	IL_3GX5_002	3GX5	0.0000	1		A	RNA (94-MER)	C	31	G	32	A	33	G	35	A	36	A	37	A	38	*	U	17	G	18	G	19	A	20	G	21		cWW		tsS			tSH		tHS		tHS		cWW
15	IL_5FJC_002	5FJC	0.1286	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33\|\|A	G	35	A	36	A	37	C	38	*	G	17	G	18	G	19	A	20	G	21		cWW		tsS			tSH		tHS		tHS		cWW
16	IL_4QVI_004	4QVI	0.1721	1	Kink-turn (H)	B	LSU rRNA	C	2129	U	2130	G	2131	G	2133	A	2134	A	2135	C	2136	*	G	2155	G	2156	G	2157	A	2158	G	2159		cWW		tsS			tSH		tHS		tHS		cWW
17	IL_4KQY_007	4KQY	0.2484	1	Kink-turn	A	SAM-I riboswitch	C	31\|\|\|\|4_555	G	32\|\|\|\|4_555	A	33\|\|\|\|4_555	G	35\|\|\|\|4_555	A	36\|\|\|\|4_555	A	37\|\|\|\|4_555	G	38\|\|\|\|4_555	*	C	17\|\|\|\|4_555	A	18\|\|\|\|4_555	G	19\|\|\|\|4_555	A	20\|\|\|\|4_555	G	21\|\|\|\|4_555		cWW		tsS			ntSH		ntHS				cWW
18	IL_4KQY_002	4KQY	0.2484	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	G	38	*	C	17	A	18	G	19	A	20	G	21		cWW		tsS			ntSH		ntHS				cWW
19	IL_4C4W_002	4C4W	0.2760	1	Kink-turn	H	TSKT-23	U	26	G	27	A	28	G	30	A	31	C	32	C	33	*	G	3	C	4	A	5	A	6	G	7		cWW		ntsS			tSH		tHS		ncBW		cWW
20	IL_4AOB_002	4AOB	0.3364	1	Kink-turn	A	SAM-I riboswitch	U	31	G	32	A	33	G	35	A	36	C	37	C	38	*	G	17	C	18	A	19	A	20	G	21		cWW		tsS			tSH				cBW		cWW
21	IL_4AOB_007	4AOB	0.3364	1	Kink-turn	A	SAM-I riboswitch	U	31\|\|\|\|7_555	G	32\|\|\|\|7_555	A	33\|\|\|\|7_555	G	35\|\|\|\|7_555	A	36\|\|\|\|7_555	C	37\|\|\|\|7_555	C	38\|\|\|\|7_555	*	G	17\|\|\|\|7_555	C	18\|\|\|\|7_555	A	19\|\|\|\|7_555	A	20\|\|\|\|7_555	G	21\|\|\|\|7_555		cWW		tsS			tSH				cBW		cWW
22	IL_4V9F_004	4V9F	0.3428	1	Kink-turn	0	LSU rRNA	C	93	G	94	A	95	G	97	A	98	A	99	C	100	*	G	77	G	78	G	79	A	80	G	81		cWW		ntsS			tSH		ntHS		tHS		cWW
23	IL_1T0K_001	1T0K	0.3471	1	Kink-turn	D+C	RNA (16-mer)	C	54	A	55	G	56	G	58	A	59	U	60	G	61	*	C	9	G	10	G	11	A	12	G	13		cWW		tsS			ntSH				ntHS		cWW
24	IL_4GXY_005	4GXY	0.3524	1	Kink-turn	A	Adenosylcobalamin riboswitch	C	139	G	140	A	141	G	143	A	144	U	145	C	146	*	G	82	G	83	G	84	A	85	G	86	ncsS	cWW		ntsS			tSH				tHS		cWW
25	IL_5FDU_004	5FDU	0.4032	1	Kink-turn (H)	1A	LSU rRNA	C	96	G	97	U	98	G	100	A	101	U	102	C	103	*	G	80	G	81	G	82	A	83	G	84	ncsS	cWW		ntsS			tSH		ntHS	tSs	tHS		cWW
26	IL_3J9W_068	3J9W	0.4061	1	Kink-turn (H)	BA	LSU rRNA	C	97	U	98	U	99	G	101	A	102	U	103	C	104	*	G	81	G	82	G	83	A	84	G	85		cWW					tSH			tSs	tHS		cWW
27	IL_4GMA_003	4GMA	0.4696	1	Kink-turn	Z	Adenosylcobalamin riboswitch	G	143	G	144	A	145	G	147	A	148	G	149	U	150	*	A	93	G	94	G	95	A	96	C	97	ncsS	cWW		ntsS			tSH			ntSs	tHS		ncWW
28	IL_4IOA_004	4IOA	0.4668	1	Kink-turn	X	LSU rRNA	C	96	U	97	U	98	G	100	A	101	C	102	U	103	*	A	80	C	81	G	82	A	83	G	84		cWW		tsS			tSH				cBW		cWW
29	IL_4V88_434	4V88	0.4959	1	Kink-turn	A6	SSU rRNA	C	910	U	911	U	912	G	914	A	915	U	916	U	917	*	G	895	U	896	C	897	A	898	G	899	ncsS	cWW		ntsS			tSH			tSs			ncWW
30	IL_5A2Q_049	5A2Q	0.5207	1	Kink-turn (H)	2	SSU rRNA	C	967	U	968	U	969	G	971	A	972	C	973	C	974	*	G	952	C	953	U	954	A	955	G	956	ncsS	cWW		ntsS			ntSH			tSs			cWW
31	IL_4V9F_031	4V9F	0.5436	2	Kink-turn	0	LSU rRNA	U	1026	G	1027	U	1028	G	1031	A	1032	C	1033	G	1034	*	C	936	C	937	G	938	A	939	G	940		cWW		ntsS			tSH				cBW		cWW
32	IL_4V4Q_191	4V4Q	0.6943	2	Kink-turn with non-sequential stacking (H)	CA	SSU rRNA	C	277	G	278	A	279	G	281	A	282	U	283	C	284	*	G	242	A	243	U	245	A	246	G	247	ncsS	cWW	ncSH				tSH	tHW				cWw	cWW
33	IL_3J7A_016	3J7A	0.6832	2	Kink-turn with non-sequential stacking (H)	A	SSU rRNA	C	354	U	355	A	356	G	358	A	359	C	360	G	361	*	U	317	A	318	C	320	A	321	G	322	csS	cWW		tsS			tSH	tHW				cwW	cWW
34	IL_3J9W_011	3J9W	0.7042	2	Kink-turn with non-sequential stacking (H)	AA	SSU rRNA	C	285	G	286	A	287	G	289	A	290	U	291	G	292	*	C	250	A	251	U	253	A	254	G	255	ncsS	cWW		ntsS			tSH	tHW		tSs		cWw	cWW
35	IL_3J9M_068	3J9M	0.7257	2		AA	SSU rRNA	U	779	C	780	A	781	A	783	A	784	C	785	G	786	*	C	756	A	757	C	759	A	760	A	761	ncsS	cWW		tsS			tSH	tHW		ntSs		cwW	cWW
36	IL_4V88_402	4V88	0.7169	2	Kink-turn with non-sequential stacking	A6	SSU rRNA	U	348	U	349	U	350	A	352	A	353	C	354	G	355	*	U	311	A	312	C	314	A	315	A	316	ncsS	cWW		tsS			ntSH	tHW				cwW	cWW
37	IL_4BTS_279	4BTS	0.7226	2	Kink-turn with non-sequential stacking (H)	DA	SSU rRNA	C	339	A	340	G	341	C	343	A	344	C	345	G	346	*	U	302	A	303	C	305	A	306	G	307	ncsS	cWW		ntsS		ntSH		tHW		tSs		cwW	cWW
38	IL_3J7P_172	3J7P	0.7709	2	Kink-turn with non-sequential stacking (H)	S2	SSU rRNA	U	396	G	397	A	398	C	400	A	401	C	402	G	403	*	U	359	A	360	C	362	A	363	A	364	csS	cWW					tSH	ntHW		tSs		cwW	ncWW	ncSH
39	IL_5A2Q_021	5A2Q	0.6903	2	Kink-turn with non-sequential stacking (H)	2	SSU rRNA	U	396	G	397	A	398	C	400	A	401	C	402	G	403	*	U	359	A	360	C	362	A	363	A	364	ncsS	cWW		tsS				ntHW				ncwW	cWW
40	IL_5AJ3_007	5AJ3	0.6718	2		A	SSU rRNA	U	135	C	136	A	137	A	139	A	140	C	141	G	142	*	U	110	A	111	C	113	A	114	A	115		cWW		tsS			ntSH	tHW				cwW	cWW
41	IL_3RW6_002	3RW6	0.6179	4	Kink-turn with non-sequential stacking	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	43	A	44	A	45	G	47	A	48	C	49	G	50	*	U	11	A	12	C	16	A	17	G	18	ncsS	cWW		tsS			tSH	tHW				cwW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAUGACC*GCAAG	3
CCUUGAAG*UGGAG	2
UGACGAAG*UCGAA	2
CGAAGAAC*GGGAG	2
CGACGAAG*CAGAG	2
UGACCACG*UAUCAA	2
CUUGGAAA*UGGAG	1
CUGUGAAG*UGGAG	1
CGGAGAAG*UGGAG	1
GAUGGAAG*UGGAC	1
CCUAGAAG*UGGAG	1
UGUUGAAG*UGGAA	1
CUGCGAAG*UGGAG	1
CGAUGAAG*UGGAG	1
CGAUGAAA*UGGAG	1
CGACGAAA*UGGAG	1
CUGUGAAC*GGGAG	1
CAGAGAUG*CGGAG	1
CGAGGAUC*GGGAG	1
CGUGGAUC*GGGAG	1
CUUUGAUC*GGGAG	1
GGAUGAGU*AGGAC	1
CUUUGACU*ACGAG	1
CUUGGAUU*GUCAG	1
CUUGGACC*GCUAG	1
UGUUUGACG*CCGAG	1
CGACGAUC*GAUUAG	1
CUAUGACG*UAUCAG	1
CGACGAUG*CAUUAG	1
UCAAAACG*CAUCAA	1
UUUCAACG*UAUCAA	1
CAGUCACG*UAUCAG	1
UCAUAACG*UAUCAA	1
CAAUGACG*UAAGACAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGAC*CAA	3
UGUGAA*GGA	2
CUUGAA*GGA	2
GAUGAA*GGA	2
GACGAA*CGA	2
GAAGAA*GGA	2
GACGAA*AGA	2
GACGAU*AUUA	2
GACCAC*AUCA	2
UUGGAA*GGA	1
GGAGAA*GGA	1
AUGGAA*GGA	1
CUAGAA*GGA	1
GUUGAA*GGA	1
UGCGAA*GGA	1
GACGAA*GGA	1
AGAGAU*GGA	1
GAGGAU*GGA	1
GUGGAU*GGA	1
UUUGAU*GGA	1
GAUGAG*GGA	1
UUUGAC*CGA	1
UUGGAU*UCA	1
UUGGAC*CUA	1
GUUUGAC*CGA	1
UAUGAC*AUCA	1
CAAAAC*AUCA	1
UUCAAC*AUCA	1
AGUCAC*AUCA	1
CAUAAC*AUCA	1
AAUGAC*AAGACA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_02471.1 Version IL_02471.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_02471.1 Version IL_02471.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json