IL_4V88_311
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGC,GCC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_311 not in the Motif Atlas
- Geometric match to IL_5F5F_001
- Geometric discrepancy: 0.2572
- The information below is about IL_5F5F_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.5
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V88|1|A5|G|1560
4V88|1|A5|G|1561
4V88|1|A5|C|1562
*
4V88|1|A5|G|1577
4V88|1|A5|C|1578
4V88|1|A5|C|1579
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- 60S ribosomal protein L2-A
- Chain DG
- 60S ribosomal protein L8-A
- Chain DX
- 60S ribosomal protein L25
Coloring options: