IL_4V88_327

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4V88|1|A5|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95863.1

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V88|1|A5|C|1918
4V88|1|A5|G|1919
4V88|1|A5|U|1920
4V88|1|A5|A|1921
4V88|1|A5|A|1922
4V88|1|A5|C|1923
*
4V88|1|A5|G|1928
4V88|1|A5|G|1929
4V88|1|A5|A|1930
4V88|1|A5|U|1931
4V88|1|A5|A|1932
4V88|1|A5|A|1933
4V88|1|A5|G|1934

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A6

Small subunit ribosomal RNA; SSU rRNA

Chain Dn

60S ribosomal protein L41-A

Chain Dp

60S ribosomal protein L43-A