Motif IL_95863.1 Version IL_95863.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	3-10	4-9	4-10	5-8	6-7
1	IL_3J79_007	3J79	0.7957	0		A	LSU rRNA	C	142	C	143	U	144	U	145	U	146	C	147	*	G	130	U	131	U	132	U	133	G	134	G	135	cWW	ncWW			ncwW	ncWw	ncWW
2	IL_3J9W_134	3J9W	0.1427	1	tSH-tSH-tHH-tHS (H)	BA	LSU rRNA	C	1731	G	1732	U	1733	A	1734	A	1735	C	1736	*	G	1741	G	1742	A	1743	A	1745	A	1746	G	1747	cWW	tSH		tHH		tHS	cWW
3	IL_5J7L_308	5J7L	0.0800	1	tSH-tSH-tHH-tHS	DA	LSU rRNA	C	1686	G	1687	U	1688	A	1689	A	1690	C	1691	*	G	1696	G	1697	A	1698	A	1700	A	1701	G	1702	cWW	tSH		tHH		tHS	cWW
4	IL_5FDU_069	5FDU	0.0818	1	tSH-tSH-tHH-tHS (H)	1A	LSU rRNA	C	1733	G	1734	U	1735	A	1736	A	1737	C	1738	*	G	1743	G	1744	A	1745	A	1747	A	1748	G	1749	cWW	tSH		tHH		tHS	cWW
5	IL_4IOA_063	4IOA	0.0745	1	tSH-tSH-tHH-tHS (H)	X	LSU rRNA	C	1703	G	1704	U	1705	A	1706	A	1707	C	1708	*	G	1713	A	1714	A	1715	A	1717	A	1718	G	1719	cWW	tSH		tHH		tHS	cWW
6	IL_4V88_327	4V88	0.0000	1		A5	LSU rRNA	C	1918	G	1919	U	1920	A	1921	A	1922	C	1923	*	G	1928	G	1929	A	1930	A	1932	A	1933	G	1934	cWW	tSH		tHH		tHS	cWW
7	IL_5AJ0_117	5AJ0	0.0973	1		A2	LSU rRNA	C	2846	G	2847	U	2848	A	2849	A	2850	C	2851	*	G	2856	G	2857	A	2858	A	2860	A	2861	G	2862	cWW	tSH		tHH		tHS	cWW
8	IL_4V91_084	4V91	0.1044	1		1	LSU rRNA	C	1918	G	1919	U	1920	A	1921	A	1922	C	1923	*	G	1928	G	1929	A	1930	A	1932	A	1933	G	1934	cWW	tSH		tHH		tHS	cWW
9	IL_4V8P_384	4V8P	0.1325	1		F1	LSU rRNA	C	1942	G	1943	U	1944	A	1945	A	1946	C	1947	*	G	1952	G	1953	A	1954	A	1956	A	1957	G	1958	cWW	tSH		tHH		tHS	cWW
10	IL_4V9F_063	4V9F	0.1044	1	tSH-tSH-tHH-tHS	0	LSU rRNA	C	1764	G	1765	U	1766	A	1767	C	1768	C	1769	*	G	1774	A	1775	A	1776	A	1778	A	1779	G	1780	cWW	tSH		tHH		tHS	cWW
11	IL_3J79_077	3J79	0.1367	1		A	LSU rRNA	C	2186	G	2187	U	2188	A	2189	A	2190	C	2191	*	G	2196	G	2197	A	2198	A	2200	A	2201	G	2202	cWW	tSH		tHH		tHS	cWW
12	IL_3J7P_096	3J7P	0.1389	1		5	LSU rRNA	C	2867	G	2868	U	2869	A	2870	A	2871	C	2872	*	G	2877	G	2878	A	2879	A	2881	A	2882	G	2883	cWW	tSH		ntHH		tHS	cWW
13	IL_3JCS_073	3JCS	0.1813	1		2	LSU rRNA	C	102	G	103	U	104	A	105	A	106	G	107	*	C	112	A	113	A	114	A	116	A	117	G	118	cWW	tSH		tHH		tHS	cWW
14	IL_3FTE_001	3FTE	0.5626	0	Quadruple sheared	D+C	RNA (22-mer)	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	*	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	cWW	tSH	ntSH			tHS	cWW
15	IL_3R9W_001	3R9W	0.6487	0	Quadruple sheared	B	RNA301	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	*	G	1515\|\|\|\|2_455	G	1516\|\|\|\|2_455	G	1517\|\|\|\|2_455	A	1518\|\|\|\|2_455	A	1519\|\|\|\|2_455	C	1520\|\|\|\|2_455	cWW	tSH	ntSH	ntHS		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUAAC*GGAUAAG	5
CGUAAC*GGAGAAG	3
GGGAAC*GGGAAC	2
CCUUUC*GUUUGG	1
CGUAAC*GAAGAAG	1
CGUACC*GAAGAAG	1
CGUAAC*GGAAAAG	1
CGUAAG*CAAGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAA*GAUAA	5
GUAA*GAGAA	3
GUAA*AAGAA	2
GGAA*GGAA	2
CUUU*UUUG	1
GUAC*AAGAA	1
GUAA*GAAAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
tSH-tSH-tHH-tHS (H) (3)
Quadruple sheared (2)
tSH-tSH-tHH-tHS (2)
Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.31 | Max 0.94

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Coloring options: Nucleotide numbers

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