IL_4V88_333

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V88|1|A5|A|2242, 4V88|1|A5|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57598.1

Basepair signature

cWW-cWW

Number of instances in this motif group

400

Unit IDs

4V88|1|A5|U|2200
4V88|1|A5|G|2201
*
4V88|1|A5|U|2241
4V88|1|A5|A|2242
4V88|1|A5|A|2243
4V88|1|A5|A|2244

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A6

Small subunit ribosomal RNA; SSU rRNA

Chain DA

60S ribosomal protein L2-A