Motif IL_57598.1 Version IL_57598.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3	2-4
1	IL_3IWN_003	3IWN	0.5533	1	Major groove intercalation	A	C-di-GMP riboswitch	G	81	G	82	*	C	42	C	44	cWW	cWW
2	IL_1U9S_006	1U9S	0.5617	1	Major groove intercalation	A	RIBONUCLEASE P	G	140	G	141	*	U	158	C	160	cWW	ncWW
3	IL_3UCZ_002	3UCZ	0.5034	1		R	RNA (92-MER)	G	86	G	87	*	C	52	C	54	cWW	cWW
4	IL_5AJ3_002	5AJ3	0.3480	1	Single bulged A (H)	A	SSU rRNA	A	39	A	40	*	U	215	U	217	cWW	cWW
5	IL_3J9M_063	3J9M	0.3143	1	Single bulged A (H)	AA	SSU rRNA	A	685	A	686	*	U	859	U	861	cWW	cWW
6	IL_5A2Q_010	5A2Q	0.3705	2		2	SSU rRNA	A	348	A	349	*	U	112	U	115	cWW	cWW
7	IL_4V88_392	4V88	0.3394	2	Multiple bulged bases	A6	SSU rRNA	A	300	A	301	*	U	113	U	116	cWW	cWW
8	IL_4V4Q_219	4V4Q	0.3402	1	Single bulged A (H)	CA	SSU rRNA	G	922	A	923	*	U	1393	C	1395	cWW	cWW
9	IL_3J79_027	3J79	0.2966	1		A	LSU rRNA	A	880	A	881	*	U	892	U	894	cWW	cWW
10	IL_4V4Q_185	4V4Q	0.3023	1	Single bulged G (H)	CA	SSU rRNA	G	75	G	76	*	U	93	C	95	cWW	cWW
11	IL_3Q1Q_004	3Q1Q	0.3060	2		B	RNase P RNA	G	108	G	109	*	C	205	C	208	cWW	cWW
12	IL_4V9F_098	4V9F	0.3854	1	Single bulged A	0	LSU rRNA	G	2860	G	2861	*	C	2895	C	2897	cWW	cWW
13	IL_5J7L_271	5J7L	0.3514	1	Single bulged G	DA	LSU rRNA	G	862	A	863	*	U	913	C	915	cWW	cWW
14	IL_4V4Q_203	4V4Q	0.2445	1		CA	SSU rRNA	C	470	U	471	*	A	460	G	462	cWW	cWW
15	IL_5AJ3_028	5AJ3	0.2145	1	Single bulged U (H)	A	SSU rRNA	A	693	G	694	*	C	608	U	610	cWW	cWW
16	IL_4V4Q_179	4V4Q	0.2177	1	Single bulged A (H)	CA	SSU rRNA	A	44	G	45	*	C	396	U	398	cWW	cWW
17	IL_4C7O_004	4C7O	0.2121	1	Single bulged G	E	SRP RNA	A	15	A	16	*	U	27	U	29	cWW	cWW
18	IL_5AJ0_087	5AJ0	0.2712	1		A2	LSU rRNA	C	2016	C	2017	*	G	1927	G	1929	cWW	cWW
19	IL_5FJC_001	5FJC	0.2417	1	Single bulged A	A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
20	IL_4V8P_361	4V8P	0.2054	1	Single bulged U (H)	F1	LSU rRNA	C	1323	C	1324	*	G	1234	G	1236	cWW	cWW
21	IL_4V88_299	4V88	0.2080	1	Single bulged U (H)	A5	LSU rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
22	IL_5AN9_011	5AN9	0.2054	1	Single bulged U (H)	N	LSU rRNA	C	1531	C	1532	*	G	1442	G	1444	cWW	cWW
23	IL_3J79_053	3J79	0.1956	1	Single bulged U (H)	A	LSU rRNA	C	1424	C	1425	*	G	1335	G	1337	cWW	cWW
24	IL_4V91_058	4V91	0.2390	1	Single bulged U (H)	1	LSU rRNA	C	1296	C	1297	*	G	1207	G	1209	cWW	cWW
25	IL_4BTS_287	4BTS	0.3395	1	Single bulged A (H)	DA	SSU rRNA	A	473	G	474	*	C	498	U	500	cWW	cWW
26	IL_4V91_002	4V91	0.2530	1	Single bulged C (H)	1+4	LSU rRNA + 5.8S rRNA	C	7	C	8	*	G	150	G	152	cWW	cWW
27	IL_4IOA_057	4IOA	0.2549	1	Single bulged C	X	LSU rRNA	A	1534	C	1535	*	G	1488	U	1490	cWW	cWW
28	IL_2A64_003	2A64	0.1814	1	Single bulged U	A	ribonuclease P RNA	C	77	C	78	*	G	66	G	68	cWW	cWW
29	IL_3DHS_003	3DHS	0.2225	1		A	RNase P RNA	C	77	C	78	*	G	66	G	68	cWW	cWW
30	IL_5GAN_007	5GAN	0.2070	1		V	U4 snRNA	U	48	U	49	*	A	24	A	26	cWW	cWW
31	IL_5GAP_002	5GAP	0.1895	1		V	U4 snRNA	U	48	U	49	*	A	24	A	26	cWW	cWW
32	IL_3J9W_069	3J9W	0.2106	1	Single bulged A (H)	BA	LSU rRNA	C	152	C	153	*	G	175	G	177	cWW	cWW
33	IL_4BTS_313	4BTS	0.1640	1		DA	SSU rRNA	U	1100	C	1101	*	G	1091	A	1093	cWW	cWW
34	IL_4RZD_001	4RZD	0.1596	1	Single bulged C	A	PreQ1-III riboswitch	C	56	C	57	*	G	78	G	80	cWW	cWW
35	IL_4V4Q_225	4V4Q	0.1548	1	Single bulged U (H)	CA	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
36	IL_4V91_075	4V91	0.1991	1		1	LSU rRNA	C	1669	C	1670	*	G	1778	G	1780	cWW	cWW
37	IL_3JAM_061	3JAM	0.1650	1	Single bulged U (H)	2	SSU rRNA	C	1438	C	1439	*	G	1267	G	1269	cWW	cWW
38	IL_4V8P_295	4V8P	0.1960	1		F1+E2	LSU rRNA	C	6	C	7	*	G	147	G	149	cWW	cWW
39	IL_4V88_243	4V88	0.2160	1	Single bulged C (H)	A5+A8	LSU rRNA + 5.8S rRNA	C	7	C	8	*	G	150	G	152	cWW	cWW
40	IL_3J7P_001	3J7P	0.2369	1	Single bulged C (H)	5+8	LSU rRNA + 5.8S rRNA	C	6	C	7	*	G	149	G	151	cWW	cWW
41	IL_3J7P_100	3J7P	0.2040	1	Single bulged A (H)	5	LSU rRNA	C	3632	C	3633	*	G	3827	G	3829	cWW	cWW
42	IL_3J7P_067	3J7P	0.2590	1		5	LSU rRNA	G	2063	G	2064	*	U	1918	C	1920	cWW	cWW
43	IL_3J79_020	3J79	0.2206	1		A	LSU rRNA	A	605	A	606	*	U	584	U	586	cWW	cWW
44	IL_4V8P_433	4V8P	0.1664	1		F1	LSU rRNA	C	3320	U	3321	*	A	3297	G	3299	cWW	cWW
45	IL_3J9W_156	3J9W	0.1917	1		BA	LSU rRNA	G	2249	G	2250	*	C	2231	C	2233	cWW	cWW
46	IL_4V88_344	4V88	0.1883	1	Single bulged A (H)	A5	LSU rRNA	G	2614	G	2615	*	C	2625	C	2627	cWW	cWW
47	IL_5AN9_029	5AN9	0.2097	1	Single bulged A (H)	N	LSU rRNA	G	2947	G	2948	*	C	2958	C	2960	cWW	cWW
48	IL_3J7P_112	3J7P	0.3212	1	Single bulged A (H)	5	LSU rRNA	G	4191	A	4192	*	U	4202	C	4204	ncWW	cWW
49	IL_3J79_093	3J79	0.2730	1		A	LSU rRNA	U	2738	U	2739	*	A	2809	A	2811	cWW	cWW
50	IL_3DHS_002	3DHS	0.2537	1		A	RNase P RNA	G	395	C	396	*	G	51	C	53	cWW	cWW
51	IL_4V88_267	4V88	0.2312	1	Single bulged U (H)	A5	LSU rRNA	A	755	U	756	*	A	775	U	777	cWW	cWW
52	IL_3J9M_064	3J9M	0.2509	1		AA	SSU rRNA	G	822	A	823	*	U	690	C	692	cWW	cWW
53	IL_4V88_370	4V88	0.3088	1		A5	LSU rRNA	A	3210	C	3211	*	G	3177	U	3179	cWW	cWW
54	IL_5AJ3_003	5AJ3	0.2830	1		A	SSU rRNA	G	178	A	179	*	U	44	C	46	cWW	cWW
55	IL_3J7P_002	3J7P	0.3342	1	Single bulged U (H)	8+5	5.8S rRNA	G	143	U	144	*	A	12	C	14	cWW
56	IL_4V91_133	4V91	0.3056	1	Single bulged A (H)	1	LSU rRNA	A	3210	C	3211	*	G	3177	U	3179	cWW	cWW
57	IL_4V8P_313	4V8P	0.3365	1	Single bulged U (H)	F1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
58	IL_5AJ3_025	5AJ3	0.3710	1	Single bulged G (H)	A	SSU rRNA	A	834	C	835	*	G	529	U	531	cWW	cWW
59	IL_5AN9_015	5AN9	0.3041	1	Single bulged A (H)	N	LSU rRNA	C	2395	C	2396	*	G	2589	G	2591	cWW	cWW
60	IL_4V19_031	4V19	0.2558	1	Single bulged A (H)	A	LSU rRNA	C	820	C	821	*	G	973	G	975	cWW	cWW
61	IL_3J7Y_033	3J7Y	0.2607	1	Single bulged A (H)	A	LSU rRNA	C	2490	C	2491	*	G	2643	G	2645	cWW	cWW
62	IL_3J79_080	3J79	0.2115	1	Single bulged A (H)	A	LSU rRNA	C	2421	C	2422	*	G	2616	G	2618	cWW	cWW
63	IL_5A2Q_066	5A2Q	0.2599	1	Single bulged U (H)	2	SSU rRNA	C	1502	C	1503	*	G	1325	G	1327	cWW	cWW
64	IL_3J79_058	3J79	0.2231	1		A	LSU rRNA	U	1557	U	1558	*	A	1548	A	1550	cWW	cWW
65	IL_4V91_003	4V91	0.2632	1	Single bulged U (H)	1+4	LSU rRNA + 5.8S rRNA	A	13	C	15	*	G	144	U	145	ncWW	cWW
66	IL_4V88_330	4V88	0.3450	1	Single bulged A (H)	A5	LSU rRNA	C	2128	U	2129	*	G	2323	G	2325	cWW	cWW
67	IL_4BTS_315	4BTS	0.3504	1	Single bulged G (H)	DA	SSU rRNA	U	1599	U	1600	*	G	1122	A	1124	cWW	cWW
68	IL_5A2Q_058	5A2Q	0.3733	1	Single bulged G (H)	2	SSU rRNA	U	1691	U	1692	*	G	1206	A	1208	cWW	cWW
69	IL_4AOB_006	4AOB	0.2062	1	Single bulged A	A	SAM-I riboswitch	C	40\|\|\|\|7_555	C	41\|\|\|\|7_555	*	G	13\|\|\|\|7_555	G	15\|\|\|\|7_555	cWW	cWW
70	IL_4AOB_001	4AOB	0.2062	1	Single bulged A	A	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
71	IL_2ZY6_002	2ZY6	0.1873	1	Single bulged U	A	phenylalanyl transfer RNA	C	24	C	25	*	G	10	G	12	cWW	cWW
72	IL_4BTS_323	4BTS	0.1729	1	Single bulged U (H)	DA	SSU rRNA	C	1411	C	1412	*	G	1240	G	1242	cWW	cWW
73	IL_5AOX_002	5AOX	0.1465	1	Single bulged A	C	ALU JO CONSENSUS RNA	C	108	C	109	*	G	56	G	58	cWW	cWW
74	IL_4V88_449	4V88	0.1785	1	Single bulged U	A6	SSU rRNA	C	1440	C	1441	*	G	1268	G	1270	cWW	cWW
75	IL_5A2Q_090	5A2Q	0.1788	1		2	SSU rRNA	C	1750	C	1751	*	G	1782	G	1784	cWW	cWW
76	IL_4P3U_011	4P3U	0.1091	1	Single bulged A	D+C	RNA (23-mer)	C	30	U	31	*	A	17	G	19	cWW	cWW
77	IL_4BTS_334	4BTS	0.1220	1		DA	SSU rRNA	C	1374	C	1375	*	G	1364	G	1366	cWW	cWW
78	IL_1S72_104	1S72	0.1222	1	Single bulged U (H)	9	5S rRNA	C	95	C	96	*	G	86	G	88	cWW	cWW
79	IL_1S03_006	1S03	0.0979	1	Single bulged C	B	47-MER	C	39	C	40	*	G	9	G	11	cWW	cWW
80	IL_3JAM_025	3JAM	0.0984	1		2	SSU rRNA	U	462	A	463	*	U	438	A	440	cWW	cWW
81	IL_1DQH_001	1DQH	0.0000	1	Single bulged C	A+B	RNA (9-mer) + RNA (10-mer)	C	3	A	4	*	U	15	G	17	cWW	cWW
82	IL_4V4Q_178	4V4Q	0.0794	1	Single bulged G (H)	CA	SSU rRNA	U	552	A	553	*	U	30	A	32	cWW	cWW
83	IL_3J9M_091	3J9M	0.1090	1	Single bulged U (H)	AA	SSU rRNA	A	1338	G	1339	*	C	1253	U	1255	cWW	cWW
84	IL_4V9F_079	4V9F	0.1594	1	Single bulged A	0	LSU rRNA	G	2279	A	2280	*	U	2290	C	2292	cWW	cWW
85	IL_3GX5_001	3GX5	0.1495	1		A	RNA (94-MER)	C	40	C	41	*	G	13	G	15	cWW	cWW
86	IL_1FJG_040	1FJG	0.1529	1	Single bulged U (H)	A	SSU rRNA	C	1208	C	1209	*	G	1048	G	1050	cWW	cWW
87	IL_4BTS_275	4BTS	0.0977	1		DA	SSU rRNA	C	192	C	193	*	G	181	G	183	cWW	cWW
88	IL_4V88_407	4V88	0.1003	1	Single bulged U	A6	SSU rRNA	U	463	A	464	*	U	439	A	441	cWW	cWW
89	IL_4BTS_284	4BTS	0.1291	1		DA	SSU rRNA	C	455	A	456	*	U	431	G	433	cWW	cWW
90	IL_1U63_004	1U63	0.2024	1	Single bulged A	D	49 NT FRAGMENT OF MRNA FOR L1	U	16	C	17	*	G	28	A	30	cWW	cWW
91	IL_3J7A_001	3J7A	0.1755	1	Single bulged C (H)	A	SSU rRNA	U	607	A	608	*	U	24	A	26	cWW	cWW
92	IL_3JAM_001	3JAM	0.1530	1	Single bulged C (H)	2	SSU rRNA	U	599	A	600	*	U	24	A	26	cWW	cWW
93	IL_3J79_026	3J79	0.1909	1	Single bulged A (H)	A	LSU rRNA	G	898	G	900	*	C	875	C	876	cWW	cWW
94	IL_3J7A_059	3J7A	0.1901	1	Single bulged A (H)	A	SSU rRNA	C	1381	G	1382	*	C	1672	G	1674	cWW	cWW
95	IL_4V8P_333	4V8P	0.1501	1	Single bulged A (H)	F1	LSU rRNA	G	804	G	806	*	C	776	C	777	cWW	cWW
96	IL_4V19_003	4V19	0.1554	1	Single bulged A (H)	A	LSU rRNA	C	12	U	13	*	A	103	G	105	cWW	cWW
97	IL_4V88_381	4V88	0.1610	1	Single bulged U (H)	A5	LSU rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
98	IL_1I9X_001	1I9X	0.1507	1	Single bulged A	B+A	RNA (13-mer)	U	9	A	10	*	U	4	A	6	cWW	cWW
99	IL_5AJ0_180	5AJ0	0.2056	1	Single bulged U (H)	A2	LSU rRNA	U	4993	C	4994	*	G	4970	A	4972	cWW	cWW
100	IL_1DQF_001	1DQF	0.1404	1	Single bulged C	A+B	RNA (9-mer) + RNA (10-mer)	C	3	A	4	*	U	15	G	17	cWW	cWW
101	IL_4V4Q_194	4V4Q	0.1813	1	Single bulged U (H)	CA	SSU rRNA	C	392	A	393	*	U	367	G	369	cWW	cWW
102	IL_3J7Y_019	3J7Y	0.1453	1	Single bulged C (H)	A	LSU rRNA	C	2254	C	2255	*	G	2145	G	2147	cWW	cWW
103	IL_4V91_145	4V91	0.1594	1		1	LSU rRNA	U	3363	C	3364	*	G	3340	A	3342	cWW	cWW
104	IL_3J7P_024	3J7P	0.1916	1		5	LSU rRNA	G	497	G	499	*	C	655	C	656	cWW	cWW
105	IL_3J7P_086	3J7P	0.2431	1	Single bulged C (H)	5	LSU rRNA	C	2613	C	2614	*	G	2724	G	2726	cWW	cWW
106	IL_4V8P_352	4V8P	0.4366	1		F1	LSU rRNA	G	1094	G	1096	*	U	1117	C	1118	cWW	cWW
107	IL_4V88_452	4V88	0.2995	1	Single bulged A	A6	SSU rRNA	C	1426	G	1428	*	C	1280	G	1281	cWW	cWW
108	IL_5A2Q_068	5A2Q	0.3190	1	Single bulged A (H)	2	SSU rRNA	C	1488	G	1490	*	C	1337	G	1338	cWW	cWW
109	IL_3J7P_214	3J7P	0.2372	1	Single bulged A (H)	S2	SSU rRNA	C	1337	G	1338	*	C	1488	G	1490	cWW	cWW
110	IL_3J7P_040	3J7P	0.1890	1		5	LSU rRNA	C	1086	A	1087	*	U	1209	G	1211	cWW	cWW
111	IL_3J7Y_056	3J7Y	0.1418	1	Single bulged A (H)	A	LSU rRNA	C	3078	G	3079	*	C	3088	G	3090	cWW	cWW
112	IL_4V19_053	4V19	0.2228	1	Single bulged A (H)	A	LSU rRNA	C	1412	G	1413	*	C	1422	G	1424	cWW	cWW
113	IL_3JAM_064	3JAM	0.2059	1	Single bulged A (H)	2	SSU rRNA	C	1279	G	1280	*	C	1424	G	1426	cWW	cWW
114	IL_3MEI_001	3MEI	0.1784	1	Single bulged U	A+B	RNA (23-mer)	C	7	G	8	*	C	15	G	17	cWW	cWW
115	IL_3J79_109	3J79	0.2041	1	Single bulged A (H)	A	LSU rRNA	C	3319	G	3320	*	C	3329	G	3331	cWW	cWW
116	IL_3JCS_109	3JCS	0.2541	1	Single bulged A (H)	2	LSU rRNA	C	1399	G	1400	*	C	1409	G	1411	cWW	cWW
117	IL_2QUX_006	2QUX	0.2851	1		R	RNA (25-MER)	C	20	G	21	*	C	5	G	7	cWW	cWW
118	IL_3J7P_089	3J7P	0.2385	1		5	LSU rRNA	G	2681	G	2682	*	C	2651	C	2653	cWW	cWW
119	IL_3NDB_004	3NDB	0.1722	1	Single bulged G	M	SRP RNA	G	137	G	138	*	C	239	C	241	cWW	ncWW
120	IL_4P3U_008	4P3U	0.1488	1	Single bulged A	D+C	RNA (23-mer)	A	40	G	42	*	C	7	U	8	cWW	cWW
121	IL_4ANG_003	4ANG	0.1849	1		R	RNA (20-mer)	A	5\|\|A\|\|P_P	G	7\|\|A\|\|P_P	*	C	15\|\|A\|\|P_P	U	16\|\|A\|\|P_P
122	IL_4ANG_001	4ANG	0.1849	1		R	RNA (20-mer)	A	5\|\|A\|\|P_1	G	7\|\|A\|\|P_1	*	C	15\|\|A\|\|P_1	U	16\|\|A\|\|P_1	cWW	cWW
123	IL_4PHY_004	4PHY	0.3373	1	Single bulged A	A+B	RNA (26-MER) + RNA (20-mer)	C	20	C	22	*	G	30	G	31	ncWW	cWW
124	IL_4V91_093	4V91	0.3286	1		1	LSU rRNA	C	2237	G	2238	*	C	2204	G	2206		cWW
125	IL_4PHY_002	4PHY	0.3192	1	Single bulged A	A+B	RNA (26-MER) + RNA (20-mer)	C	12	C	13	*	G	38	G	40	cWW	cWW
126	IL_4P43_003	4P43	0.2197	1	Single bulged A	B+A	RNA (23-mer)	C	30	U	31	*	A	17	G	19	cWW	cWW
127	IL_4P43_002	4P43	0.2093	1	Single bulged A	A+B	RNA (23-mer)	C	7	U	8	*	A	40	G	42	cWW	cWW
128	IL_5AJ0_001	5AJ0	0.2158	1	Single bulged C (H)	A2+A3	LSU rRNA + 5.8S rRNA	C	6	C	7	*	G	149	G	151	cWW	cWW
129	IL_3J9M_073	3J9M	0.1832	1	Single bulged G (H)	AA	SSU rRNA	U	838	A	839	*	U	850	A	852	cWW	cWW
130	IL_3J79_124	3J79	0.1584	1		A	LSU rRNA	C	3716	A	3717	*	U	3773	G	3775	cWW	cWW
131	IL_4X4O_002	4X4O	0.1293	3		D	G70A tRNA minihelix	C	3	C	4	*	G	28	G	32	cWW	cWW
132	IL_4V8P_418	4V8P	0.1688	1	Single bulged A (H)	F1	LSU rRNA	C	2948	G	2949	*	C	2958	G	2960	cWW	cWW
133	IL_4V9F_090	4V9F	0.1612	1	Single bulged A	0	LSU rRNA	C	2626	G	2627	*	C	2636	G	2638	cWW	cWW
134	IL_4V88_360	4V88	0.1858	1	Single bulged A (H)	A5	LSU rRNA	C	2960	G	2961	*	C	2970	G	2972	cWW	cWW
135	IL_5AJ0_157	5AJ0	0.1884	1		A2	LSU rRNA	C	4499	G	4500	*	C	4509	G	4511	cWW	cWW
136	IL_5AN9_045	5AN9	0.2044	1	Single bulged A (H)	N	LSU rRNA	C	3293	G	3294	*	C	3303	G	3305	cWW	cWW
137	IL_3J9W_169	3J9W	0.2000	1	Single bulged A (H)	BA	LSU rRNA	C	2620	G	2621	*	C	2630	G	2632	cWW	cWW
138	IL_5J7L_344	5J7L	0.1861	1	Single bulged A	DA	LSU rRNA	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
139	IL_4V91_122	4V91	0.1801	1	Single bulged A (H)	1	LSU rRNA	C	2960	G	2961	*	C	2970	G	2972	cWW	cWW
140	IL_4R0D_005	4R0D	0.2534	1		A	Group II catalytic intron	G	148	G	149	*	U	121	C	123		ncWW
141	IL_5J7L_275	5J7L	0.2479	1	Single bulged A (H)	DA	LSU rRNA	G	880	G	881	*	U	895	C	897	cWW	cWW
142	IL_4V8P_308	4V8P	0.3230	1		F1	LSU rRNA	G	158	G	159	*	U	260	C	262	cWW	cWW
143	IL_4BTS_271	4BTS	0.3242	2	Multiple bulged bases (H)	DA	SSU rRNA	A	291	G	292	*	U	109	U	112	cWW	cWW
144	IL_3J7A_009	3J7A	0.3902	2	Multiple bulged bases (H)	A	SSU rRNA	A	306	G	307	*	U	115	U	118	cWW	cWW
145	IL_5AJ3_012	5AJ3	0.3820	1	Single bulged G (H)	A	SSU rRNA	U	194	G	195	*	U	206	A	208	cWW	cWW
146	IL_3J9W_015	3J9W	0.3216	1	Single bulged G (H)	AA	SSU rRNA	U	383	G	384	*	U	395	A	397	cWW	cWW
147	IL_3DIR_005	3DIR	0.4045	1		A	RNA (174-MER)	G	84	G	85	*	U	109	C	111	cWW	cWW
148	IL_3J9W_159	3J9W	0.3244	1	Single bulged U (H)	BA	LSU rRNA	G	2443	G	2444	*	U	2430	C	2432	cWW	cWW
149	IL_4V9F_010	4V9F	0.3517	1	Single bulged G	0	LSU rRNA	G	274	G	275	*	U	374	C	376	cWW	cWW
150	IL_3IWN_004	3IWN	0.3587	2	Multiple bulged bases	A	C-di-GMP riboswitch	G	46	G	47	*	U	76	C	79	cWW	cWW
151	IL_1FJG_007	1FJG	0.2985	2	Multiple bulged bases (H)	A	SSU rRNA	G	231	G	232	*	U	129	C	131	cWW	cWW
152	IL_5FDU_033	5FDU	0.3876	1	Single bulged A (H)	1A	LSU rRNA	G	927	G	928	*	U	941	C	943	cWW	cWW
153	IL_4V4Q_196	4V4Q	0.3175	1	Single bulged G (H)	CA	SSU rRNA	U	375	G	376	*	U	387	A	389	cWW	cWW
154	IL_1FJG_016	1FJG	0.2749	1		A	SSU rRNA	U	375	G	376	*	U	387	A	389	cWW	cWW
155	IL_1FUF_002	1FUF	0.3710	2	Multiple bulged bases	B+A	RNA (14-mer)	G	23	G	24	*	U	5	C	8	cWW	cWW
156	IL_1FUF_003	1FUF	0.3784	2	Multiple bulged bases	A+B	RNA (14-mer)	G	9	G	10	*	U	19	C	22	cWW	cWW
157	IL_5J7L_334	5J7L	0.3451	1	Single bulged U	DA	LSU rRNA	G	2414	G	2415	*	U	2401	C	2403	cWW	cWW
158	IL_3UCZ_003	3UCZ	0.3299	2		R	RNA (92-MER)	G	56	G	57	*	U	81	C	84	cWW	cWW
159	IL_5AN9_018	5AN9	0.3503	2	Multiple bulged bases (H)	N	LSU rRNA	U	2466	G	2467	*	U	2507	A	2510	cWW	cWW
160	IL_3J7Y_035	3J7Y	0.3622	2	Major groove intercalation (H)	A	LSU rRNA	U	2552	G	2553	*	U	2562	A	2565	cWW	cWW
161	IL_3J79_083	3J79	0.3535	2	Multiple bulged bases (H)	A	LSU rRNA	U	2493	G	2494	*	U	2534	A	2537	cWW	cWW
162	IL_5J7L_315	5J7L	0.3852	2	Major groove intercalation	DA	LSU rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
163	IL_3J9W_139	3J9W	0.3770	2	Major groove intercalation (H)	BA	LSU rRNA	U	1870	G	1871	*	U	1927	A	1930	cWW	cWW
164	IL_4V19_033	4V19	0.4003	2	Major groove intercalation (H)	A	LSU rRNA	U	882	G	883	*	U	892	A	895	cWW	cWW
165	IL_4V88_333	4V88	0.4032	2	Multiple bulged bases (H)	A5	LSU rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
166	IL_3J7P_103	3J7P	0.3671	2	Multiple bulged bases (H)	5	LSU rRNA	U	3704	G	3705	*	U	3745	A	3748	cWW	cWW
167	IL_5LJ3_006	5LJ3	0.2122	1		V	U6 snRNA	G	81	A	82	*	U	65	C	67	cWW	cWW
168	IL_3J7A_041	3J7A	0.2031	1		A	SSU rRNA	A	936	G	937	*	C	1027	U	1029	cWW	cWW
169	IL_4IOA_031	4IOA	0.2333	1	Single bulged C	X	LSU rRNA	U	1170	A	1171	*	U	1005	A	1007	cWW	cWW
170	IL_5FDU_035	5FDU	0.2179	1	Single bulged C (H)	1A	LSU rRNA	U	1205	G	1206	*	C	1040	A	1042	cWW	cWW
171	IL_4V9F_064	4V9F	0.2110	1	Single bulged A	0	LSU rRNA	C	1826	G	1827	*	C	2021	G	2023	cWW	cWW
172	IL_3B31_001	3B31	0.2346	1		A	RNA (29-MER)	C	6194	G	6195	*	C	6181	G	6183	cWW	cWW
173	IL_4V8P_390	4V8P	0.2813	1		F1	LSU rRNA	C	2232	G	2233	*	C	2199	G	2201	cWW	cWW
174	IL_5J7L_276	5J7L	0.2799	1	Single bulged C	DA	LSU rRNA	U	1159	G	1160	*	C	994	A	996	cWW	cWW
175	IL_1U9S_003	1U9S	0.2898	2	Major groove intercalation	A	RIBONUCLEASE P	U	116	G	117	*	C	224	A	227	cWW	cWW
176	IL_4KZD_001	4KZD	0.2369	1	Single bulged U	R	RNA (84-MER)	C	10	G	11	*	C	74	G	76	cWW	cWW
177	IL_4R4V_004	4R4V	0.2775	1	Single bulged A	A	VS ribozyme RNA	C	660	A	661	*	U	712	G	714	cWW	cWW
178	IL_4R4V_010	4R4V	0.2775	1	Single bulged A	A	VS ribozyme RNA	C	660\|\|\|\|7_556	A	661\|\|\|\|7_556	*	U	712\|\|\|\|7_556	G	714\|\|\|\|7_556	cWW	cWW
179	IL_4V8P_407	4V8P	0.3700	1		F1	LSU rRNA	A	2774	G	2775	*	C	2760	U	2762	cWW	cWW
180	IL_1NBS_009	1NBS	0.3735	2	Major groove intercalation	B	RNase P class B	U	181	G	182	*	U	228	A	231	cWW	cWW
181	IL_4V88_334	4V88	0.3879	1	Single bulged U (H)	A5	LSU rRNA	C	2237	G	2238	*	C	2204	G	2206	cWW	cWW
182	IL_5AN9_019	5AN9	0.3514	1		N	LSU rRNA	C	2503	G	2504	*	C	2470	G	2472	cWW	cWW
183	IL_3JB9_001	3JB9	0.4264	1		C	U5 snRNA	C	7	G	8	*	C	89	G	91	cWW	cWW
184	IL_3JAM_081	3JAM	0.4172	1		2	SSU rRNA	U	1654	G	1656	*	U	1741	A	1742	cWW	cWW
185	IL_4V91_022	4V91	0.3164	1	Single bulged A (H)	1	LSU rRNA	C	577	G	579	*	U	512	G	513	cWW	ncWW
186	IL_4BTS_326	4BTS	0.2964	1	Single bulged A (H)	DA	SSU rRNA	C	1397	G	1399	*	C	1252	G	1253	cWW	cWW
187	IL_5DEA_002	5DEA	0.2351	1	Single bulged G	C	sc1	C	30	G	31	*	C	5	G	7	cWW	cWW
188	IL_5DEA_001	5DEA	0.2167	1		A	sc1	C	30	G	31	*	C	5	G	7	cWW	cWW
189	IL_5A2Q_074	5A2Q	0.2724	1		2	SSU rRNA	C	1412	G	1413	*	C	1427	G	1429	cWW	cWW
190	IL_3J9M_094	3J9M	0.3268	1		AA	SSU rRNA	U	1325	G	1327	*	C	1265	A	1266	cWW	cWW
191	IL_4V88_275	4V88	0.2289	1	Single bulged U (H)	A5	LSU rRNA	C	873	G	875	*	C	886	G	887	cWW	cWW
192	IL_4V8P_341	4V8P	0.2561	1	Single bulged U (H)	F1	LSU rRNA	C	898	G	900	*	C	911	G	912	cWW	cWW
193	IL_1FJG_043	1FJG	0.3051	1		A	SSU rRNA	C	1195	G	1197	*	C	1060	G	1061	cWW	cWW
194	IL_4R4V_003	4R4V	0.3050	1	Single bulged A	A	VS ribozyme RNA	C	766	G	767	*	C	651	G	653	cWW	cWW
195	IL_4R4V_009	4R4V	0.3050	1	Single bulged A	A	VS ribozyme RNA	C	766\|\|\|\|7_556	G	767\|\|\|\|7_556	*	C	651\|\|\|\|7_556	G	653\|\|\|\|7_556	cWW	cWW
196	IL_5AJ3_031	5AJ3	0.3547	1	Single bulged A (H)	A	SSU rRNA	C	620	A	621	*	U	680	G	682	cWW	cWW
197	IL_3J9W_099	3J9W	0.3830	1	Single bulged C (H)	BA	LSU rRNA	U	1205	G	1206	*	C	1040	A	1042	cWW	cWW
198	IL_4BTS_283	4BTS	0.4246	1		DA	SSU rRNA	U	412	G	414	*	C	402	A	403	cWW	cWW
199	IL_4R0D_019	4R0D	0.4285	2		A	Group II catalytic intron	C	572	G	575	*	U	558	G	559	cWW	cWW
200	IL_4V8P_425	4V8P	0.4140	1		F1	LSU rRNA	G	3144	G	3146	*	U	3247	C	3248	cWW	cWW
201	IL_5AJ0_165	5AJ0	0.4020	2	Multiple bulged bases (H)	A2	LSU rRNA	A	4617	G	4620	*	U	4603	U	4604	ncWW	cWW
202	IL_3J79_116	3J79	0.3434	2	Multiple bulged bases (H)	A	LSU rRNA	A	3462	G	3465	*	U	3448	U	3449	cWW	cWW
203	IL_5J7L_349	5J7L	0.3681	2	Multiple bulged bases	DA	LSU rRNA	A	2711	G	2714	*	U	2695	U	2696	cWW	cWW
204	IL_5AN9_050	5AN9	0.3929	2	Multiple bulged bases (H)	N	LSU rRNA	A	3413	G	3416	*	U	3399	U	3400	cWW	cWW
205	IL_4V8P_423	4V8P	0.4080	2	Multiple bulged bases (H)	F1	LSU rRNA	A	3066	G	3069	*	U	3052	U	3053	cWW	cWW
206	IL_3J9W_174	3J9W	0.4567	2	Multiple bulged bases (H)	BA	LSU rRNA	A	2740	G	2743	*	U	2724	U	2725	cWW	cWW
207	IL_3J7P_136	3J7P	0.4664	2	Multiple bulged bases (H)	5	LSU rRNA	A	4655	G	4658	*	U	4641	U	4642	cWW	ncWW
208	IL_3J7P_075	3J7P	0.4068	1		5	LSU rRNA	C	2083	G	2085	*	C	2272	G	2273		cWW
209	IL_4V91_064	4V91	0.4130	1	Single bulged A (H)	1	LSU rRNA	C	1385	G	1387	*	C	1420	G	1421	cWW	cWW
210	IL_3J9W_043	3J9W	0.3138	1	Single bulged A (H)	AA	SSU rRNA	C	1204	A	1206	*	U	1070	G	1071	cWW	cWW
211	IL_5AJ0_065	5AJ0	0.2310	1	Single bulged U (H)	A2	LSU rRNA	C	1572	G	1574	*	C	1585	G	1586	cWW	cWW
212	IL_4V4Q_228	4V4Q	0.2472	1	Single bulged A (H)	CA	SSU rRNA	C	1195	A	1197	*	U	1060	G	1061	cWW	cWW
213	IL_4LGT_004	4LGT	0.2725	1		F	stem-loop of 23S rRNA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
214	IL_3J7P_052	3J7P	0.2035	1	Single bulged U (H)	5	LSU rRNA	C	1590	G	1592	*	C	1603	G	1604	cWW	cWW
215	IL_3J9M_071	3J9M	0.2636	1		AA	SSU rRNA	A	855	A	856	*	U	830	U	832	cWW	cWW
216	IL_1JZV_005	1JZV	0.2149	1		C+D	RNA (8-mer) + RNA (9-mer)	G	24	A	25	*	U	32	C	34	cWW	cWW
217	IL_4FRN_004	4FRN	0.2865	1		B	Cobalamin riboswitch aptamer domain	C	39	C	40	*	G	23	G	25	cWW	cWW
218	IL_5AJ0_094	5AJ0	0.3789	1	Single bulged A (H)	A2	LSU rRNA	G	2278	G	2280	*	C	2313	C	2314	cWW	cWW
219	IL_1S03_001	1S03	0.4253	1	Single bulged U	A	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
220	IL_3JCS_105	3JCS	0.4208	2	Multiple bulged bases (H)	2	LSU rRNA	A	1379	G	1382	*	C	1320	U	1321	cWW	cWW
221	IL_4V88_366	4V88	0.3419	2	Multiple bulged bases (H)	A5	LSU rRNA	A	3077	G	3080	*	C	3063	U	3064	cWW	cWW
222	IL_4V91_129	4V91	0.3298	2	Multiple bulged bases (H)	1	LSU rRNA	A	3077	G	3080	*	C	3063	U	3064	cWW	cWW
223	IL_3J7P_142	3J7P	0.4119	1		5	LSU rRNA	G	4899	G	4901	*	C	4920	C	4921	cWW	cWW
224	IL_5AN9_042	5AN9	0.4444	2	Multiple bulged bases (H)	N	LSU rRNA	A	3273	G	3276	*	C	3214	U	3215	cWW	cWW
225	IL_3J79_106	3J79	0.4859	2	Multiple bulged bases (H)	A	LSU rRNA	A	3299	G	3302	*	C	3240	U	3241	cWW	cWW
226	IL_3J7P_125	3J7P	0.5490	2		5	LSU rRNA	A	4517	G	4520	*	C	4458	U	4459	cWW	cWW
227	IL_3J7P_077	3J7P	0.3170	1	Single bulged A (H)	5	LSU rRNA	G	2299	G	2301	*	C	2334	C	2335	ncWW	ncWW
228	IL_3J7P_028	3J7P	0.2451	1		5	LSU rRNA	G	708	C	709	*	G	1287	C	1289	cWW
229	IL_3J7P_046	3J7P	0.2076	1	Single bulged A (H)	5	LSU rRNA	G	1496	G	1498	*	C	1467	C	1468	cWW	cWW
230	IL_5AJ0_120	5AJ0	0.1455	1	Single bulged A (H)	A2	LSU rRNA	C	3603	C	3604	*	G	3798	G	3800	cWW	cWW
231	IL_1I9X_002	1I9X	0.1182	1	Single bulged A	A+B	RNA (13-mer)	U	9	A	10	*	U	4	A	6	cWW	cWW
232	IL_3J7Q_149	3J7Q	0.1632	1		7	5S rRNA	C	15	A	16	*	U	62	G	64	cWW	ncWW
233	IL_3J7P_147	3J7P	0.1990	1	Single bulged U (H)	5	LSU rRNA	U	5035	C	5036	*	G	5012	A	5014	cWW	ncWW
234	IL_5A2Q_026	5A2Q	0.1565	1	Single bulged U (H)	2	SSU rRNA	U	511	A	512	*	U	487	A	489	cWW	cWW
235	IL_3J7P_177	3J7P	0.1207	1	Single bulged U (H)	S2	SSU rRNA	U	511	A	512	*	U	487	A	489	cWW	cWW
236	IL_3J7A_021	3J7A	0.1376	1	Single bulged U (H)	A	SSU rRNA	U	469	A	470	*	U	445	A	447	cWW	cWW
237	IL_3J79_030	3J79	0.1225	1		A	LSU rRNA	C	1014	A	1016	*	U	947	G	948	cWW	cWW
238	IL_1FJG_001	1FJG	0.1334	1	Single bulged G (H)	A	SSU rRNA	U	552	A	553	*	U	30	A	32	cWW	cWW
239	IL_4V8P_312	4V8P	0.2107	2		F1	LSU rRNA	A	240	G	243	*	C	177	U	178	cWW	cWW
240	IL_4IOA_075	4IOA	0.2373	1	Single bulged U	X	LSU rRNA	G	2050	G	2052	*	C	2421	C	2422	cWW	cWW
241	IL_3J9W_148	3J9W	0.2479	1	Single bulged U (H)	BA	LSU rRNA	G	2096	G	2098	*	C	2471	C	2472	cWW	cWW
242	IL_5FDU_081	5FDU	0.2065	1	Single bulged U (H)	1A	LSU rRNA	G	2089	G	2091	*	C	2454	C	2455	cWW	cWW
243	IL_1S03_005	1S03	0.2192	1	Single bulged U	B	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
244	IL_4V9F_039	4V9F	0.2524	1	Single bulged U	0	LSU rRNA	G	1108	G	1110	*	C	1253	C	1254	cWW	cWW
245	IL_3D0U_001	3D0U	0.2319	1	Single bulged C	A	Lysine Riboswitch RNA	G	9	G	11	*	C	75	C	76	cWW	cWW
246	IL_3DIR_001	3DIR	0.2520	1		A	RNA (174-MER)	G	12	G	14	*	C	78	C	79	cWW	cWW
247	IL_5AJ0_002	5AJ0	0.2411	1	Single bulged U (H)	A3+A2	5.8S rRNA	G	143	U	144	*	A	12	C	14	cWW	cWW
248	IL_1ZDK_003	1ZDK	0.2647	1		S	RNA (19-mer)	G	7\|\|\|\|P_1	G	9\|\|\|\|P_1	*	C	16\|\|\|\|P_1	C	17\|\|\|\|P_1	cWW	cWW
249	IL_1ZDK_007	1ZDK	0.2647	1		S	RNA (19-mer)	G	7\|\|\|\|P_P	G	9\|\|\|\|P_P	*	C	16\|\|\|\|P_P	C	17\|\|\|\|P_P
250	IL_3J7P_026	3J7P	0.2169	1		5	LSU rRNA	G	508	U	510	*	A	649	C	650	cWW	cWW
251	IL_3J7Y_040	3J7Y	0.1700	1	Single bulged U (H)	A	LSU rRNA	A	2730	G	2732	*	C	2929	U	2930	cWW	cWW
252	IL_4V19_038	4V19	0.2185	1	Single bulged U (H)	A	LSU rRNA	A	1060	G	1062	*	C	1263	U	1264	cWW	cWW
253	IL_4FRG_002	4FRG	0.1993	1	Single bulged U	B	cobalamin riboswitch aptamer domain	G	23	G	25	*	C	39	C	40	cWW	cWW
254	IL_2IZN_005	2IZN	0.2095	1	Single bulged G	R	RNA (19-mer)	G	14\|\|\|\|P_P	G	15\|\|\|\|P_P	*	C	5\|\|\|\|P_P	C	7\|\|\|\|P_P
255	IL_2IZN_001	2IZN	0.2095	1	Single bulged G	R	RNA (19-mer)	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	*	C	5\|\|\|\|P_1	C	7\|\|\|\|P_1	cWW	cWW
256	IL_4V91_028	4V91	0.2658	1	Single bulged A (H)	1	LSU rRNA	G	779	G	781	*	C	752	C	753	cWW	cWW
257	IL_4V8P_378	4V8P	0.2421	1		F1	LSU rRNA	U	1758	G	1760	*	C	1733	A	1734	ncWW	cWW
258	IL_4V91_036	4V91	0.2178	1	Single bulged U (H)	1	LSU rRNA	C	873	G	875	*	C	886	G	887	cWW	cWW
259	IL_3J79_034	3J79	0.1976	1	Single bulged U (H)	A	LSU rRNA	C	992	G	994	*	C	1005	G	1006	cWW	cWW
260	IL_4V8P_440	4V8P	0.2331	1	Single bulged A (H)	G3	5S rRNA	U	62	A	64	*	U	15	A	16	cWW	cWW
261	IL_4V9F_074	4V9F	0.2403	1	Single bulged U	0	LSU rRNA	A	2108	G	2110	*	C	2477	U	2478	cWW	cWW
262	IL_3NDB_005	3NDB	0.2496	1	Single bulged U	M	SRP RNA	G	237	G	238	*	C	139	C	141	cWW	cWW
263	IL_6MSF_003	6MSF	0.2741	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_P	G	13\|\|\|\|P_P	*	C	2\|\|\|\|P_P	C	4\|\|\|\|P_P
264	IL_6MSF_001	6MSF	0.2741	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	*	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	cWW	cWW
265	IL_4V88_384	4V88	0.2553	1	Single bulged C	A6	SSU rRNA	U	24	A	26	*	U	600	A	601	cWW	cWW
266	IL_3J9W_076	3J9W	0.3229	1		BA	LSU rRNA	G	344	G	346	*	C	359	C	360	cWW	cWW
267	IL_5AJ0_057	5AJ0	0.2773	1	Single bulged A (H)	A2	LSU rRNA	G	1478	G	1480	*	C	1449	C	1450	cWW	cWW
268	IL_4V88_266	4V88	0.2337	1	Single bulged A (H)	A5	LSU rRNA	G	779	G	781	*	C	752	C	753	cWW	cWW
269	IL_4V88_439	4V88	0.2962	1	Single bulged U	A6	SSU rRNA	G	1051	G	1053	*	C	1066	C	1067	cWW	cWW
270	IL_3J7Y_001	3J7Y	0.2603	1	Single bulged A (H)	A	LSU rRNA	G	1768	G	1770	*	C	1682	C	1683	cWW	cWW
271	IL_3SN2_001	3SN2	0.2106	1	Single bulged C	B	transferrin receptor iron regulatory element B RNA	U	7	G	9	*	C	24	A	25	cWW	cWW
272	IL_1S03_002	1S03	0.1853	1	Single bulged C	A	47-MER	G	9	G	11	*	C	39	C	40	cWW	cWW
273	IL_3J92_171	3J92	0.1572	1	Single bulged A (H)	7	5S rRNA	C	15	A	16	*	U	62	G	64	cWW	cWW
274	IL_3J9W_001	3J9W	0.2102	1	Single bulged G (H)	AA	SSU rRNA	C	32	A	34	*	U	561	G	562	cWW	cWW
275	IL_2UWM_003	2UWM	0.2282	1	Single bulged U	D	RNA (23-mer)	C	21	G	22	*	C	25	G	27	cWW	cWW
276	IL_3W3S_005	3W3S	0.2733	1	Single bulged U	B	Selenocysteine transfer RNA	G	43\|\|\|\|43_455	G	44\|\|\|\|43_455	*	C	26\|\|\|\|43_455	C	27\|\|\|\|43_455	cWW	cWW
277	IL_3W3S_002	3W3S	0.2733	1	Single bulged U	B	Selenocysteine transfer RNA	G	43	G	44	*	C	26	C	27	cWW	cWW
278	IL_4V88_318	4V88	0.2705	1	Single bulged C (H)	A5	LSU rRNA	G	1778	G	1780	*	C	1669	C	1670	cWW	cWW
279	IL_4V8P_386	4V8P	0.2976	1	Single bulged A (H)	F1	LSU rRNA	G	2318	G	2320	*	C	2124	C	2125	cWW	cWW
280	IL_4V8P_358	4V8P	0.2343	1	Single bulged U (H)	F1	LSU rRNA	A	1207	G	1209	*	U	1351	U	1352	cWW	cWW
281	IL_3J9W_040	3J9W	0.2511	1	Single bulged U (H)	AA	SSU rRNA	G	1058	G	1060	*	C	1217	C	1218	cWW	cWW
282	IL_3D2V_001	3D2V	0.2383	1	Single bulged U	A	TPP riboswitch (THI element)	G	73	G	75	*	C	5	C	6	cWW	cWW
283	IL_4U4U_453	4U4U	0.1624	1	Single bulged A (H)	7	5S rRNA	A	63	G	65	*	C	15	U	16	cWW	cWW
284	IL_3J79_127	3J79	0.1703	1		A	LSU rRNA	A	3731	G	3733	*	C	3756	U	3757	cWW	cWW
285	IL_1R3E_001	1R3E	0.1810	3	Multiple bulged bases	D+E	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
286	IL_3J7P_211	3J7P	0.2665	1	Single bulged U (H)	S2	SSU rRNA	G	1325	G	1327	*	C	1502	C	1503	cWW	cWW
287	IL_4V19_017	4V19	0.3311	1	Single bulged C (H)	A	LSU rRNA	G	477	G	479	*	C	586	C	587	cWW	cWW
288	IL_3J7P_019	3J7P	0.2951	1		5	LSU rRNA	G	695	G	697	*	C	459	C	460	cWW	cWW
289	IL_3J79_119	3J79	0.2822	1		A	LSU rRNA	G	3580	G	3582	*	C	3620	C	3621	cWW	cWW
290	IL_3JAM_050	3JAM	0.2734	1	Single bulged U (H)	2	SSU rRNA	G	1050	G	1052	*	C	1065	C	1066	cWW	cWW
291	IL_3JAN_006	3JAN	0.3192	1		4	SRP RNA	G	175	G	177	*	C	220	C	221	cWW	cWW
292	IL_3J9W_035	3J9W	0.3365	1	Single bulged G (H)	AA	SSU rRNA	G	935	G	937	*	U	1399	U	1400	cWW	cWW
293	IL_1FJG_036	1FJG	0.3571	1	Single bulged G (H)	A	SSU rRNA	G	925	G	927	*	U	1390	U	1391	cWW	cWW
294	IL_4V4Q_220	4V4Q	0.3350	1	Single bulged G (H)	CA	SSU rRNA	G	925	G	927	*	U	1390	U	1391	cWW	cWW
295	IL_3TZR_002	3TZR	0.2141	1	Single bulged U	B+A	RNA (16-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
296	IL_3J79_012	3J79	0.3323	1	Single bulged U (H)	A	LSU rRNA	G	197	G	199	*	U	212	C	213	cWW	cWW
297	IL_2PN4_008	2PN4	0.3214	1		D+C	RNA (20-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
298	IL_5A2Q_094	5A2Q	0.2947	1		3	IRES	G	105	G	107	*	U	61	C	62	cWW	cWW
299	IL_5AJ0_108	5AJ0	0.3923	1	Single bulged C (H)	A2	LSU rRNA	G	2703	G	2705	*	C	2592	C	2593	cWW	ncWW
300	IL_4V8P_374	4V8P	0.4662	1		F1	LSU rRNA	G	1804	G	1806	*	U	1693	C	1694	cWW	cWW
301	IL_4JGN_006	4JGN	0.3949	0		E	RNA (20-mer)	U	503	G	504	*	C	520\|\|\|\|4_555	U	521\|\|\|\|4_555	cWw	cWW
302	IL_3JAM_053	3JAM	0.3735	1	Single bulged G (H)	2	SSU rRNA	G	1148	A	1150	*	U	1625	U	1626	cWW	cWW
303	IL_3J7A_052	3J7A	0.3900	1	Single bulged G (H)	A	SSU rRNA	G	1250	A	1252	*	U	1924	U	1925	cWW	cWW
304	IL_4V91_088	4V91	0.4669	1	Single bulged A (H)	1	LSU rRNA	G	2323	G	2325	*	C	2128	U	2129	cWW	cWW
305	IL_4V88_442	4V88	0.4324	1	Single bulged G	A6	SSU rRNA	G	1149	A	1151	*	U	1627	U	1628	cWW	cWW
306	IL_4V8P_292	4V8P	0.4623	1	Single bulged A (H)	F1+E2	LSU rRNA	G	336	C	338	*	G	28	U	29	cWW	cWW
307	IL_5A2Q_033	5A2Q	0.3883	1		2	SSU rRNA	G	606	C	608	*	G	635	C	636	cWW	cWW
308	IL_3J9M_061	3J9M	0.3491	1		AA	SSU rRNA	A	649	A	651	*	U	667	U	668	cWW	cWW
309	IL_5AJ0_038	5AJ0	0.3020	1		A2	LSU rRNA	G	699	C	700	*	G	1270	C	1272	cWW	cWW
310	IL_3J79_090	3J79	0.3033	1	Single bulged U (H)	A	LSU rRNA	A	3170	C	3171	*	G	2702	U	2704	cWW	cWW
311	IL_1NBS_005	1NBS	0.2949	1	Single bulged A	B	RNase P class B	G	113	C	114	*	G	129	C	131	cWW	cWW
312	IL_5AJ3_001	5AJ3	0.3041	1		A	SSU rRNA	U	21	U	22	*	A	3	A	5	ncWW	cWW
313	IL_3J79_050	3J79	0.3267	1	Single bulged U (H)	A	LSU rRNA	A	1308	A	1310	*	U	1452	U	1453	cWW	cWW
314	IL_4V88_372	4V88	0.2820	1		A5	LSU rRNA	C	3193	C	3194	*	G	3197	G	3199	cWW	cWW
315	IL_1FJG_014	1FJG	0.2141	1	Single bulged U (H)	A	SSU rRNA	G	392	A	393	*	U	367	C	369	cWW	cWW
316	IL_4V9F_029	4V9F	0.2328	1	Single bulged U	0	LSU rRNA	G	834	G	836	*	C	847	C	848	cWW	cWW
317	IL_4V8P_397	4V8P	0.2387	1	Single bulged U (H)	F1	LSU rRNA	G	2404	U	2406	*	A	2799	C	2800	cWW	cWW
318	IL_4V88_339	4V88	0.2251	1	Single bulged U (H)	A5	LSU rRNA	G	2409	U	2411	*	A	2811	C	2812	cWW	cWW
319	IL_5AJ0_131	5AJ0	0.2663	1	Single bulged U (H)	A2	LSU rRNA	G	3884	U	3886	*	A	4350	C	4351	cWW	cWW
320	IL_4V91_100	4V91	0.2843	1	Single bulged U (H)	1	LSU rRNA	A	2811	C	2812	*	G	2409	U	2411	cWW	cWW
321	IL_3J7P_107	3J7P	0.2980	1	Single bulged U (H)	5	LSU rRNA	G	3913	U	3915	*	A	4388	C	4389	cWW	cWW
322	IL_4IOA_002	4IOA	0.3147	1	Single bulged A	X	LSU rRNA	G	36	C	37	*	G	454	C	456	cWW	cWW
323	IL_5J7L_246	5J7L	0.2563	1	Single bulged A	DA	LSU rRNA	G	36	C	37	*	G	442	C	444	cWW	cWW
324	IL_5FDU_002	5FDU	0.3132	1	Single bulged A (H)	1A	LSU rRNA	G	36	C	37	*	G	468	C	470	cWW	cWW
325	IL_5AN9_025	5AN9	0.3051	1	Single bulged U (H)	N	LSU rRNA	G	2675	U	2677	*	A	3144	C	3145	cWW	cWW
326	IL_3JCS_069	3JCS	0.3319	1		2	LSU rRNA	A	74	A	76	*	U	589	U	590	cWW	cWW
327	IL_4V8C_111	4V8C	0.3429	1		AB	5S rRNA	G	118	A	119	*	U	1	C	2	cWW	cWW
328	IL_4R0D_008	4R0D	0.2990	1		A	Group II catalytic intron	G	312	A	314	*	U	161	C	162	cWW	ncWW
329	IL_4V8P_426	4V8P	0.2965	1		F1	LSU rRNA	G	3158	A	3160	*	U	3179	C	3180	cWW	cWW
330	IL_3V7E_001	3V7E	0.3263	1	Single bulged A	C	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
331	IL_2VPL_002	2VPL	0.2106	1	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	U	16	C	17	*	G	28	A	30	cWW	cWW
332	IL_3J7A_056	3J7A	0.1557	1	Single bulged U (H)	A	SSU rRNA	C	1686	C	1687	*	G	1369	G	1371	cWW	cWW
333	IL_3WBM_001	3WBM	0.1955	1	Single bulged U	Y+X	RNA (25-MER)	U	23	C	24	*	G	2	A	4	cWW	cWW
334	IL_4V88_244	4V88	0.2374	1	Single bulged U (H)	A5+A8	LSU rRNA + 5.8S rRNA	A	13	C	15	*	G	144	U	145	cWW	cWW
335	IL_1R3E_002	1R3E	0.1706	3	Multiple bulged bases	D+E	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
336	IL_4BTS_293	4BTS	0.2057	1		DA	SSU rRNA	A	579	G	580	*	C	552	U	554	cWW	cWW
337	IL_4P3U_005	4P3U	0.1641	1	Single bulged A	A+B	RNA (23-mer)	A	17	G	19	*	C	30	U	31	cWW	cWW
338	IL_4P3U_002	4P3U	0.2903	1	Single bulged A	B+A	RNA (23-mer)	A	40	G	42	*	C	7	U	8	ncWW	cWW
339	IL_1SI3_002	1SI3	0.3163	0		B	RNA (9-mer)	C	401	G	402	*	C	406\|\|\|\|4_675	U	407\|\|\|\|4_675	cWW	cWW
340	IL_5FDU_060	5FDU	0.3427	1	Single bulged A (H)	1A	LSU rRNA	G	1506	G	1508	*	C	1498	C	1499	cWW	cWW
341	IL_4IOA_015	4IOA	0.3174	1	Single bulged A	X	LSU rRNA	G	776	G	778	*	C	710	C	711	cWW	cWW
342	IL_5FDU_019	5FDU	0.3147	1	Single bulged A (H)	1A	LSU rRNA	G	810	G	812	*	C	744	C	745	cWW	cWW
343	IL_4IOA_034	4IOA	0.2934	1	Single bulged U	X	LSU rRNA	A	1022	G	1024	*	C	1160	U	1161	cWW	cWW
344	IL_3OX0_001	3OX0	0.3649	1		A	Domain II of glycine riboswitch	G	12	A	14	*	U	27	C	28	cWW	cWW
345	IL_4V88_296	4V88	0.3871	1		A5	LSU rRNA	A	1180	A	1182	*	U	1324	U	1325	cWW	cWW
346	IL_4V91_055	4V91	0.3706	1		1	LSU rRNA	A	1180	A	1182	*	U	1324	U	1325	cWW	cWW
347	IL_3J79_031	3J79	0.3915	1	Single bulged G (H)	A	LSU rRNA	G	978	A	980	*	U	952	U	953	cWW	cWW
348	IL_4V88_383	4V88	0.3267	2	Multiple bulged bases (H)	A5	LSU rRNA	G	3353	G	3356	*	C	3349	C	3350	cWW	cWW
349	IL_5AN9_033	5AN9	0.3406	1		N	LSU rRNA	G	3104	G	3106	*	C	3120	C	3121	cWW	cWW
350	IL_4V91_135	4V91	0.4998	1	Single bulged U (H)	1	LSU rRNA	G	3197	G	3199	*	C	3193	C	3194	cWW	cWW
351	IL_4V19_034	4V19	0.5995	2		A	LSU rRNA	G	926	C	927	*	G	957	U	960	cWW	cWW
352	IL_4V9F_026	4V9F	0.4817	1	Single bulged G	0	LSU rRNA	A	819	U	821	*	A	793	U	794	cWW	cWW
353	IL_4V91_141	4V91	0.4768	1		1	LSU rRNA	G	3318	A	3320	*	U	3387	C	3388	cWW	cWW
354	IL_4V88_401	4V88	0.4977	1	Single bulged U	A6	SSU rRNA	G	279	G	281	*	C	275	C	276	cWW	cWW
355	IL_4V88_377	4V88	0.4798	1	Single bulged U (H)	A5	LSU rRNA	G	3318	A	3320	*	U	3387	C	3388	cWW	cWW
356	IL_4V91_148	4V91	0.4959	2	Multiple bulged bases (H)	1	LSU rRNA	G	3353	G	3356	*	C	3349	C	3350	cWW	cWW
357	IL_3J9M_105	3J9M	0.4498	1		AA	SSU rRNA	G	1538	A	1540	*	U	1510	C	1511	cWW	cWW
358	IL_4V8P_294	4V8P	0.4403	1		E2	5.8S rRNA	G	71	C	72	*	G	90	C	92	cWW	cWW
359	IL_4V91_157	4V91	0.4761	1	Single bulged U (H)	4	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
360	IL_4V88_486	4V88	0.4719	1	Single bulged U (H)	A8	5.8S rRNA	G	68	U	69	*	A	89	C	91	cWW	cWW
361	IL_4V8P_403	4V8P	0.4627	1	Single bulged A (H)	F1	LSU rRNA	G	2603	U	2604	*	A	2614	U	2616	cWW	cWW
362	IL_4V88_255	4V88	0.4557	1	Single bulged A (H)	A8+A5	5.8S rRNA	G	25	U	26	*	G	337	C	339	cWW	cWW
363	IL_4V91_016	4V91	0.4636	1	Single bulged A (H)	4+1	5.8S rRNA	G	25	U	26	*	G	337	C	339	cWW	cWW
364	IL_3J7P_179	3J7P	0.4103	1		S2	SSU rRNA	U	495	C	496	*	G	506	A	508	cWW	ncWW
365	IL_4V9F_013	4V9F	0.3337	1	Single bulged U	0	LSU rRNA	G	322	C	323	*	G	307	C	309	cWW	cWW
366	IL_4V88_414	4V88	0.4092	1	Single bulged U	A6	SSU rRNA	G	586	C	587	*	G	557	C	559	cWW	cWW
367	IL_2OIU_001	2OIU	0.3532	1		P	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
368	IL_4V91_015	4V91	0.4182	1	Single bulged U (H)	1	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
369	IL_5AJ0_035	5AJ0	0.4227	1		A2	LSU rRNA	A	643	C	644	*	G	502	U	504	cWW	cWW
370	IL_4V9F_002	4V9F	0.3898	1	Single bulged A	0	LSU rRNA	G	33	C	34	*	G	448	C	450	cWW	cWW
371	IL_5AJ0_017	5AJ0	0.3644	1	Single bulged A (H)	A3+A2	5.8S rRNA	G	25	C	26	*	G	342	C	344	cWW	cWW
372	IL_1DUQ_008	1DUQ	0.3282	1		G+H	THE REV BINDING ELEMENT	G	408	C	409	*	G	420	C	422	cWW	cWW
373	IL_2PJP_001	2PJP	0.3758	1	Single bulged U	B	SECIS RNA	A	29	C	30	*	G	16	U	18	cWW	cWW
374	IL_1U9S_001	1U9S	0.4069	1	Single bulged A	A	RIBONUCLEASE P	G	95	C	96	*	G	107	C	109	cWW	cWW
375	IL_5A2Q_028	5A2Q	0.4349	1	Single bulged A (H)	2	SSU rRNA	A	529	U	530	*	A	554	U	556	cWW	cWW
376	IL_2OIU_003	2OIU	0.3814	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	A	41	C	42	*	G	18	U	20	cWW	cWW
377	IL_4BTS_292	4BTS	0.3981	1		DA	SSU rRNA	G	580	C	581	*	G	550	C	552	cWW	cWW
378	IL_1CSL_002	1CSL	0.4048	1	Single bulged A	A+B	RNA (13-mer) + RNA (15-mer)	G	50	C	51	*	G	67	C	69	cWW	cWW
379	IL_5F5H_002	5F5H	0.4044	1	Single bulged C	D	RNA (21-mer)	A	4	C	5	*	G	18	U	20	cWW	cWW
380	IL_5F5H_001	5F5H	0.3830	1	Single bulged C	C	RNA (21-mer)	A	4	C	5	*	G	18	U	20	cWW	cWW
381	IL_3JAM_032	3JAM	0.3889	1	Single bulged U (H)	2	SSU rRNA	G	585	C	586	*	G	556	C	558	cWW	cWW
382	IL_3J79_001	3J79	0.3243	1	Single bulged U (H)	C+A	5.8S rRNA	A	151	C	152	*	G	13	U	15	cWW	cWW
383	IL_4BTS_331	4BTS	0.3767	1		DA	SSU rRNA	U	1322	C	1323	*	G	1343	A	1345	cWW	cWW
384	IL_3J7P_013	3J7P	0.4368	1	Single bulged U (H)	5	LSU rRNA	G	214	C	215	*	G	199	C	201	cWW	cWW
385	IL_4V8P_402	4V8P	0.4211	1		F1	LSU rRNA	A	2557	U	2558	*	A	2561	U	2563	cWW	cWW
386	IL_3HHN_003	3HHN	0.3593	1	Single bulged C	E	Class I ligase ribozyme, self-ligation product	A	112	C	113	*	G	46	U	48	cWW	cWW
387	IL_4V88_254	4V88	0.3717	1	Single bulged U (H)	A5	LSU rRNA	A	204	C	205	*	G	189	U	191	cWW	cWW
388	IL_5AJ0_070	5AJ0	0.3837	1	Single bulged G (H)	A2	LSU rRNA	A	1819	U	1820	*	A	1705	U	1707	cWW	cWW
389	IL_4V88_399	4V88	0.3658	1	Single bulged A	A6	SSU rRNA	A	288	U	289	*	A	265	U	267	cWW	cWW
390	IL_3JAM_018	3JAM	0.3476	1	Single bulged A (H)	2	SSU rRNA	A	287	U	288	*	A	264	U	266	cWW	cWW
391	IL_3J79_038	3J79	0.4638	1	Single bulged G (H)	A	LSU rRNA	A	1226	U	1227	*	A	1105	U	1107	cWW	cWW
392	IL_2A64_002	2A64	0.4222	1	Single bulged U	A	ribonuclease P RNA	G	395	C	396	*	G	51	C	53	cWW	cWW
393	IL_3J7A_014	3J7A	0.4295	1	Single bulged A (H)	A	SSU rRNA	G	294	U	295	*	A	266	C	268	cWW	cWW
394	IL_3JAM_027	3JAM	0.4426	1		2	SSU rRNA	U	446	C	447	*	G	457	A	459	cWW	cWW
395	IL_4O26_001	4O26	0.4843	1	Single bulged U	E	Telomerase TR	G	193	C	194	*	G	181	C	183	cWW	cWW
396	IL_4V88_409	4V88	0.3965	1	Single bulged A	A6	SSU rRNA	A	481	U	482	*	A	505	U	507	cWW	cWW
397	IL_3J9W_002	3J9W	0.3108	1	Single bulged A (H)	AA	SSU rRNA	G	46	U	47	*	A	404	C	406	cWW	cWW
398	IL_4BTS_286	4BTS	0.3656	1		DA	SSU rRNA	U	439	C	440	*	G	450	A	452	cWW	cWW
399	IL_2XXA_010	2XXA	0.4158	1		G	SSRP RNA	G	17	C	18	*	G	82	C	84	cWW	cWW	ncWw
400	IL_5A2Q_019	5A2Q	0.3816	1	Single bulged A (H)	2	SSU rRNA	A	336	C	337	*	G	312	U	314	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GUG	22
GAG*CC	20
CG*CAG	20
GUG*CC	16
CC*GAG	15
GC*GUC	9
AC*GUU	9
GC*GAC	9
CC*GCG	8
GCG*CC	8
CG*CUG	8
GA*UAC	7
UG*UAAA	7
CUG*CG	7
AUG*CU	7
AAG*CU	6
GG*UGC	5
GG*CAC	5
UC*GUA	5
GG*CGC	5
UA*UUA	5
CA*UCG	5
CAG*CG	5
GUG*UC	5
GUU*AC	5
AU*AAU	5
CU*AAG	4
AC*GCU	4
AC*GAU	4
GU*AUC	4
CA*UAG	4
UG*UGA	4
AACG*CU	4
GGA*UU	4
AUA*UU	4
GG*CUC	3
AG*CAU	3
UU*AUA	3
UA*UCA	3
UA*UAA	3
GG*UAC	3
GG*UUC	3
UG*CCA	3
CG*CGG	3
UCG*CA	3
AAUG*UU	3
CAA*UG	3
GGG*UU	3
GAA*UC	3
UC*GGA	3
AA*UAU	2
AA*UUU	2
AG*CCU	2
AU*AUU	2
AUC*GU	2
UU*GGA	2
UA*UGA	2
CA*UUG	2
UC*GAA	2
UC*GCA	2
GCG*UC	2
AG*UAGU	2
GG*UAGC	2
GG*UUUC	2
UG*UUAA	2
AG*CUU	2
AGUG*UU	2
AUUG*CU	2
GC*GGC	2
GUUG*CC	2
GUA*UC	2
GU*GAC	2
GU*AAC	2
AA*UGGU	1
AA*UCGU	1
GG*CAAC	1
GA*UGC	1
AA*UGU	1
AA*UCU	1
CU*AUG	1
UU*AAA	1
AC*GGU	1
CU*GAG	1
CU*ACG	1
CAC*GG	1
CC*GAUCG	1
GG*UGAC	1
GA*UCC	1
UG*CAAA	1
UUG*UA	1
CAG*UG	1
UAG*CA	1
CAAG*UG	1
ACUG*UU	1
AUCG*UU	1
CCG*CG	1
AAGG*CU	1
GAU*AC	1
UAA*UA	1
UCA*UA	1
CGA*UG	1
AUG*UU	1
GUUCG*CC	1
UG*CU	1
GAG*CU	1
GAC*GU	1
GUC*GC	1
UU*ACA	1
GA*UUC	1
ACA*UU	1
CC*GUUCG	1
CG*CU	1
GC*GUAU	1
AGU*AU	1
GCA*UC	1
GU*AAU	1
AU*AGU	1
GC*GCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	93
*U	81
U*	51
A*	44
*C	32
*G	30
C*	17
*AA	9
G*	9
*AG	4
AC*	4
UU*	4
*UA	3
AU*	3
*UU	2
GU*	2
*	2
*GG	1
*CG	1
*AUC	1
*GA	1
AA*	1
CU*	1
UC*	1
AG*	1
UUC*	1
*UUC	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (114)
Single bulged A (H) (66)
Single bulged U (H) (62)
Single bulged A (38)
Single bulged U (30)
Multiple bulged bases (H) (20)
Single bulged G (H) (19)
Single bulged C (14)
Single bulged C (H) (13)
Single bulged G (9)
Multiple bulged bases (7)
Major groove intercalation (5)
Major groove intercalation (H) (3)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.03 | Avg 0.39 | Max 0.99

Help

Coloring options: Nucleotide numbers

Motif IL_57598.1 Version IL_57598.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_57598.1 Version IL_57598.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json