IL_4V88_347

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

4V88|1|A5|U|2718
4V88|1|A5|U|2719
4V88|1|A5|G|2720
4V88|1|A5|A|2721
*
4V88|1|A5|U|2735
4V88|1|A5|A|2736
4V88|1|A5|C|2737
4V88|1|A5|A|2738

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DD

60S ribosomal protein L5

Chain DQ

60S ribosomal protein L18-A

Chain DT

60S ribosomal protein L21-A

Chain Db

60S ribosomal protein L29

Chain Do

60S ribosomal protein L42-A