IL_4V88_361

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

4V88|1|A5|A|3142, 4V88|1|A5|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75779.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

55

Unit IDs

4V88|1|A5|C|3004
4V88|1|A5|A|3005
4V88|1|A5|A|3006
4V88|1|A5|U|3007
*
4V88|1|A5|A|3139
4V88|1|A5|G|3140
4V88|1|A5|A|3141
4V88|1|A5|A|3142
4V88|1|A5|C|3143
4V88|1|A5|G|3144

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain DO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B