IL_4V88_363

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGUAC*GGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86124.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

4V88|1|A5|C|3018
4V88|1|A5|U|3019
4V88|1|A5|U|3020
4V88|1|A5|A|3021
4V88|1|A5|G|3022
4V88|1|A5|U|3023
4V88|1|A5|A|3024
4V88|1|A5|C|3025
*
4V88|1|A5|G|3030
4V88|1|A5|G|3031
4V88|1|A5|A|3032
4V88|1|A5|A|3033
4V88|1|A5|C|3034
4V88|1|A5|A|3035
4V88|1|A5|G|3036

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain DH

60S ribosomal protein L9-A

Chain DV

60S ribosomal protein L23-A

Chain Dm

60S ribosomal protein L40