IL_4V88_392

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

4V88|1|A6|C|114, 4V88|1|A6|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V88|1|A6|U|113
4V88|1|A6|C|114
4V88|1|A6|G|115
4V88|1|A6|U|116
*
4V88|1|A6|A|300
4V88|1|A6|A|301

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CI

40S ribosomal protein S8-A

Chain CL

40S ribosomal protein S11-A