IL_4V88_402
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 4V88|1|A6|U|313, 4V88|1|A6|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
4V88|1|A6|U|311
4V88|1|A6|A|312
4V88|1|A6|U|313
4V88|1|A6|C|314
4V88|1|A6|A|315
4V88|1|A6|A|316
*
4V88|1|A6|U|348
4V88|1|A6|U|349
4V88|1|A6|U|350
4V88|1|A6|C|351
4V88|1|A6|A|352
4V88|1|A6|A|353
4V88|1|A6|C|354
4V88|1|A6|G|355
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CI
- 40S ribosomal protein S8-A
- Chain CL
- 40S ribosomal protein S11-A
- Chain CX
- 40S ribosomal protein S23-A
Coloring options: