IL_4V88_408

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

4V88|1|A6|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V88|1|A6|C|443
4V88|1|A6|C|444
4V88|1|A6|A|445
4V88|1|A6|A|446
4V88|1|A6|U|447
4V88|1|A6|C|448
*
4V88|1|A6|G|458
4V88|1|A6|G|459
4V88|1|A6|A|460
4V88|1|A6|G|461

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CJ

40S ribosomal protein S9-A

Chain CY

40S ribosomal protein S24-A