Motif IL_11347.2 Version IL_11347.2 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-3 | 1-8 | 2-7 | 4-8 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_408 | 4V88 | 0.9322 | 2 | C-loop with extra cWW pair | A6 | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW |
| 2 | IL_8C3A_412 | 8C3A | 0.0000 | 1 | CM | SSU rRNA | C | 374 | G | 375 | A | 376 | U | 377 | C | 379 | * | G | 361 | G | 362 | G | 363 | cWW | cWW | ||||
| 3 | IL_4V88_404 | 4V88 | 0.0735 | 1 | A6 | SSU rRNA | C | 376 | G | 377 | A | 378 | U | 379 | C | 381 | * | G | 363 | G | 364 | G | 365 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUUC*GGG | 2 |
| CCAAUC*GGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUU*G | 2 |
| CAAU*GA | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- C-loop with extra cWW pair (1)
- Basepair signature
- cWW-cWW-L-cWW-L
- Heat map statistics
- Min 0.07 | Avg 0.43 | Max 0.94
Coloring options: