IL_4V88_410

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGGGCCC*GGGUCUUG

Length

16 nucleotides

Bulged bases

4V88|1|A6|C|489

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.2

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A6|C|484
4V88|1|A6|A|485
4V88|1|A6|G|486
4V88|1|A6|G|487
4V88|1|A6|G|488
4V88|1|A6|C|489
4V88|1|A6|C|490
4V88|1|A6|C|491
*
4V88|1|A6|G|496
4V88|1|A6|G|497
4V88|1|A6|G|498
4V88|1|A6|U|499
4V88|1|A6|C|500
4V88|1|A6|U|501
4V88|1|A6|U|502
4V88|1|A6|G|503

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CJ

40S ribosomal protein S9-A

Chain Ce

40S ribosomal protein S30-A