Motif IL_80604.2 Version IL_80604.2 of this group appears in releases 3.80 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	3-12	3-13	4-11	5-10	5-12	6-9	7-8
1	IL_4V88_410	4V88	0.9929	2		A6	SSU rRNA	C	484	A	485	G	486	G	487	G	488	C	490	C	491	*	G	496	G	497	G	498	U	499	C	500	U	502	G	503	cWW	ncWW					ncSW		cWW
2	IL_5J7L_012	5J7L	0.1705	1	tWH-tWH-tHW-tHW	AA	SSU rRNA	G	147	G	148	A	149	U	150	A	151	A	152	C	153	*	G	168	C	169	U	170	A	171	A	172	A	174	C	175	cWW	cWW	tWH		tWH	tHW			cWW
3	IL_4V88_394	4V88	0.1066	1	tWH-tWH-tHW-tHW	A6	SSU rRNA	G	143	U	144	A	145	U	146	A	147	A	148	C	149	*	G	165	C	166	U	167	A	168	A	169	A	171	C	172	cWW		tWH		tWH	tHW		tHW	cWW
4	IL_8C3A_402	8C3A	0.0000	1	tWH-tWH-tHW-tHW (H)	CM	SSU rRNA	G	141	G	142	A	143	U	144	A	145	A	146	C	147	*	G	163	C	164	U	165	A	166	A	167	A	169	C	170	cWW	cWW	tWH			tHW		tHW	cWW
5	IL_6CZR_121	6CZR	0.4640	1	tWH-tWH-tHW-tHW	1a	SSU rRNA	G	162	G	163	C	164	U	165	A	166	A	167	C	169	*	G	143	A	144	C	145	A	146	A	147	C	148	C	149	ncWW			ncBW	ntWH	ntHW		ncBW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAUAAC*GCUAAUAC	2
CAGGGCCC*GGGUCUUG	1
GUAUAAC*GCUAAUAC	1
GGCUAAUC*GACAACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUAA*CUAAUA	2
AGGGCC*GGUCUU	1
UAUAA*CUAAUA	1
GCUAAU*ACAAC	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tWH-tWH-tHW-tHW (3)
(1)
tWH-tWH-tHW-tHW (H) (1)
Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
Heat map statistics: Min 0.11 | Avg 0.46 | Max 0.99

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